somatic wgs typi

wustl-oncology · Jan 25, 2024 · 6638a35 · 6638a35
1 parent 026a7a7
commit 6638a35
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/definitions/somatic_wgs.wdl b/definitions/somatic_wgs.wdl
@@ -178,9 +178,9 @@ workflow somaticWgs {
     reference_fai=reference_fai,
     reference_dict=reference_dict,
     tumor_cram=tumorAlignment.final_bam,
-    tumor_cram_bai=tumorAlignment.final_bam_bai,
+    tumor_cram_index=tumorAlignment.final_bam_bai,
     normal_cram=normalAlignment.final_bam,
-    normal_cram_bai=normalAlignment.final_bam_bai,
+    normal_cram_index=normalAlignment.final_bam_bai,
     roi_intervals=target_intervals,
     strelka_exome_mode=false,
     strelka_cpu_reserved=strelka_cpu_reserved,