fix typos

wustl-oncology · Jan 21, 2025 · 61f42c4 · 61f42c4
1 parent bb12979
commit 61f42c4
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/definitions/immuno.wdl b/definitions/immuno.wdl
@@ -268,7 +268,7 @@ workflow immuno {
     Boolean singecell_barcode 
     Boolean intron_motif_priority
     Int? pvacsplice_threads
-    Int? juction_score
+    Int? junction_score
     Int? variant_distance
     Boolean? save_gtf
     Array[String]? junction_anchor_types
@@ -595,7 +595,7 @@ workflow immuno {
     problematic_amino_acids=problematic_amino_acids,
     biotypes=biotypes,
     aggregate_inclusion_count_limit=aggregate_inclusion_count_limit,
-    juction_score=juction_score,
+    junction_score=junction_score,
     variant_distance=variant_distance,
     save_gtf=save_gtf,
     junction_anchor_types=junction_anchor_types,

diff --git a/definitions/subworkflows/pvacsplice.wdl b/definitions/subworkflows/pvacsplice.wdl
@@ -72,7 +72,7 @@ workflow pvacsplice {
     Array[String]? problematic_amino_acids
     Array[String]? biotypes
     Int? aggregate_inclusion_count_limit
-    Int? juction_score
+    Int? junction_score
     Int? variant_distance
     Boolean? save_gtf 
     Array[String]? junction_anchor_types
@@ -180,7 +180,7 @@ workflow pvacsplice {
     problematic_amino_acids=problematic_amino_acids,
     biotypes=biotypes,
     aggregate_inclusion_count_limit=aggregate_inclusion_count_limit,
-    juction_score=juction_score,
+    junction_score=junction_score,
     variant_distance=variant_distance,
     save_gtf=save_gtf,
     junction_anchor_types=junction_anchor_types,

diff --git a/definitions/tools/pvacsplice.wdl b/definitions/tools/pvacsplice.wdl
@@ -39,7 +39,7 @@ task pvacsplice {
     Array[String]? biotypes
     Int? aggregate_inclusion_count_limit
 
-    Int? juction_score
+    Int? junction_score
     Int? variant_distance
     Boolean save_gtf = false
     Array[String]? junction_anchor_types
@@ -106,7 +106,7 @@ task pvacsplice {
     ~{if defined(maximum_transcript_support_level) then "--maximum-transcript-support-level ~{maximum_transcript_support_level}" else ""} \
     ~{if length(problematic_aa) > 0 then "--problematic-amino-acids" else ""} ~{sep="," problematic_aa} \
     ~{if length(biotypes_list) > 0 then "--biotypes" else ""} ~{sep="," biotypes_list} \
-    ~{if defined(juction_score) then "--junction-score ~{junction_score}" else ""} \
+    ~{if defined(junction_score) then "--junction-score ~{junction_score}" else ""} \
     ~{if defined(variant_distance) then "--variant-distance ~{variant_distance}" else ""} \
     ~{if save_gtf then "-g" else ""} \
     ~{if length(junction_anchor_types_list) > 0 then "--anchor-types" else ""} ~{sep="," junction_anchor_types_list}