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Introduction

MAVE-QC is a flexible R package for analysing SGE experimental data. It facilitates the QC of individual samples, libraries or screens and provides a framework for further analysis.

Experimental design, library annotations (including variant consequences) and count data are used to generate a R markdown/HTML report. This graphical QC summary allows users to rapidly assess the quality of any given sample or experiment, based on sequencing read counts and mapping statistics, positional effects and variant-consequences.

Installation

Install from github

install.packages("devtools")

library(devtools)
install_github("wtsi-hgi/MAVEQC")

Or

Install from the compiled source file

install.packages("/path/of/MAVEQC.tar.gz", type = "source")