Conda testing #16

	name: Dev CIF API CI/CD Conda

	on:
	pull_request:
	workflow_dispatch:

	permissions:
	contents: read
	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 4
	matrix:
	python-version: ["3.10"]
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v4
	- uses: conda-incubator/setup-miniconda@v2
	with:
	miniconda-version: "latest"
	channels: bioconda, conda-forge, defaults
	use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
	auto-update-conda: true
	auto-activate-base: true
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	- name: Install Linux dependencies
	run: \|
	sudo apt update
	sudo apt install -y gdal-bin libgdal-dev
	- name: Install Packages
	run: \|
	conda env create --name env --file=.github/environment.yml --yes
	conda install gdal --yes
	conda upgrade numpy --yes
	- name: Initialize Environment
	run: \|
	source ~/.bashrc
	conda activate env
	- name: Run Tests
	env:
	GOOGLE_APPLICATION_USER: ${{ secrets.GOOGLE_APPLICATION_USER }}
	GOOGLE_APPLICATION_CREDENTIALS: ${{ secrets.GOOGLE_APPLICATION_CREDENTIALS }}
	run: \|
	pytest tests

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