Skip to content

Classify the variation types annotated by snpeff into genomic regions

Notifications You must be signed in to change notification settings

wpf95/snpeff_class_variant_in_region

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
 
 
 
 
 
 

Repository files navigation

snpeff_class_variant_in_region

Classify the variation types annotated by snpeff into genomic regions

step1: less snpeff.vcf |awk -F"\t|\\|" '{printf ("%s\t%s\t%s\t%s\n", $1,$2,$3,$9)}' > input.file
step2: python anno_region.py input.file > out.file

vep_class_variant_in_region

run command: python anno_class_vep.py vcf.file > out.file

About

Classify the variation types annotated by snpeff into genomic regions

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages