GuCi

Small script/lib for calculating GC content

Quickstart

$ python3 guci.py

Dependencies

$ # pyfastx
$ # polars
$ # matplotlib
$ pip install -r requirements.txt

Usage

usage: guci.py [-h] -f FASTA -w WINDOW [-o OUT_FOLDER] [-p {png,pdf}]

Plot GC content of genomes.

options:
  -h, --help            show this help message and exit
  -f FASTA, --fasta FASTA
                        Fasta file
  -w WINDOW, --window WINDOW
                        Size of sliding window
  -o OUT_FOLDER, --out_folder OUT_FOLDER
                        Output folder
  -p {png,pdf}, --plot_type {png,pdf}
                        How to save the plots

Example

Contribute

• Please give the repo a star!
• PR´s are welcome!