The idea of this package is to have several of the functions used in a exploratory analysis of ChIP-seq and ChIP-exo data all together in one package.
We also included some commonly used quality control measures:
-
PCR bottleneck coefficient
-
Strand cross-correlation
To install the package it is better to use:
## install.packages("devtools") ## to install devtools
devtools::install_github("welch16/ChIPUtils",ref = "devel")
## or
devtools::install_github("welch16/ChIPUtils",ref = "devel",build_vignettes = TRUE)