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Bioinformatics material: handling VCF, SAM, GTF files.

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Bioinformatics

Repository with some useful python scripts at the service of Bioinformatics, from global alignment to fasta/fastq, SAM, VCF and GTF file handling.

This material was developed in order to take the "Bioinformatics" exam at Polythecnic of Turin (yy 2020-2021).

Remember:

Unzip the GTF for letting mains.py to work where needed.

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Bioinformatics material: handling VCF, SAM, GTF files.

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  • Python 31.3%
  • C++ 22.5%
  • CMake 19.7%
  • C 17.5%
  • Makefile 9.0%