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November 15, 2017, Wednesday

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Liya Wang edited this page Nov 30, 2017 · 17 revisions
  • Accomplished
    • Sub-pages!
    • My jobs page!
  • Possible improvements
    • Add start time and finish time to job table
      • So 'My jobs' page can display them for sorting
    • Add workflow depth when building workflow
      • So we don't need to calculate depth for each step when we need to display the diagram
    • Change url back to homepage when loading a public workflow (instead of workflowRunner)
    • CSS and other minor modifications
      • For subpages and My jobs page
      • Change logout warning to "History panel will be erased but you can reload them from 'My jobs' page"
  • Webinar for methylation
    • Use community version
      • Still keep apps private?
        • We can still use one user
        • We write to the sci_data folder
        • Might be easy for us to set up cronjob so we can still keep data on the server?
      • Can add multiQC (need to improve the interface, check galaxy)
      • Can load JBrowse view? (need to check Araport tutorial from Matt)
        • Need to test
      • Shall we point de.sciapps.org to brie for the community version?
        • Yes, switch de.sciapps.org and dev1.sciapps.org, can hold until new year
      • In addition to private and public apps, we need to add curated apps that are public
        • Curated apps can be private?
    • Use public version for backing up
    • Shall we change the topic of the webinar?
      • Assembly and annotation of small genomes
        • Need to integrate more apps
      • Association
        • Need to add more genomes to the Shiny app
  • MaizeCode
    • de-link SciApps and Apps with maizecode repo and synbolic link
      • Create a new branch for public on maizecode repo
    • Create a new Agave system for depositing new Agave apps with files-upload
      • So we don't need to manually update de.sciapps.org
      • Doesn't work since brebiou is behind firewall
  • Possible improvements
    • (Done) Deal with webhook problem
      • When user check job status from right panel, job status gets updated
      • This provides one way for us to rescue?
    • Add 'Creating time' for 'My workflows'
      • Divide three columns and fix width for workflow name (250) and time (155)
      • (Fixed) Also it seems that we can change workflow and description but changes are not saved
    • (Done) Support 'Deleting' for 'My jobs'
    • (Done) Support 'Search' for 'My jobs'
    • (Done) Support 'Search' for 'My workflows'
    • (Done) Use the react-bootstrap-table for 'Public workflows'
    • (Done) Update 'Help' page
      • Maximum upload is not 1.9 GB
      • Add link to platform guide to the beginning
    • Add limit to data (1.9 GB) when user try to bring data from CyVerse Data Store
      • Popup window with link to de.sciapps.org (the community version)
      • 1.9 GB for a single file or folder?
      • Can we add this limit on the Data Store side?
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