set assay rownames

waldronlab · Oct 7, 2023 · 086d953 · 086d953
1 parent efab363
commit 086d953
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -31,7 +31,7 @@ biocViews:
     Homo_sapiens_Data,
     MicrobiomeData,
     ReproducibleResearch
-Version: 3.9.0
+Version: 3.9.1
 License: Artistic-2.0
 Depends:
     R (>= 4.1.0),

diff --git a/R/curatedMetagenomicData.R b/R/curatedMetagenomicData.R
@@ -236,6 +236,9 @@ curatedMetagenomicData <- function(pattern, dryrun = TRUE, counts = FALSE, rowna
 
                 rownames(tree_summarized_experiment) <-
                     rowData(tree_summarized_experiment)[["species"]]
+
+                rownames(assay(tree_summarized_experiment)) <-
+                    rowData(tree_summarized_experiment)[["species"]]
             }
 
             resource_list[[i]] <-