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  1. cem-dataset cem-dataset Public

    Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.

    Jupyter Notebook 26 1

  2. empanada-napari empanada-napari Public

    Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

    Python 19 8

  3. bootstrap2.5d bootstrap2.5d Public

    Code for the paper: Enforcing Prediction Consistency Across Orthogonal Planes Significantly Improves Segmentation of FIB-SEM Image Volumes by 2D Neural Networks.

    Python 1

Repositories

Showing 10 of 12 repositories
  • empanada-napari-docs Public

    Documentation for empanada-napari (https://github.com/volume-em/empanada-napari)

    volume-em/empanada-napari-docs’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Jul 29, 2024
  • empanada-napari Public

    Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

    volume-em/empanada-napari’s past year of commit activity
    Python 19 BSD-3-Clause 8 6 2 Updated Jul 29, 2024
  • empanada-private Public Forked from volume-em/empanada

    Panoptic segmentation algorithms for 2D and 3D electron microscopy images

    volume-em/empanada-private’s past year of commit activity
    Python 0 GPL-2.0 1 0 0 Updated Jul 22, 2024
  • empanada-napari-private Public Forked from volume-em/empanada-napari

    Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

    volume-em/empanada-napari-private’s past year of commit activity
    Python 0 BSD-3-Clause 8 0 0 Updated Jul 22, 2024
  • BSS-Tracker Public

    This is a project tracking tool that connects biological specimen entries with a project's investigator, biological sample and sample prep notes.

    volume-em/BSS-Tracker’s past year of commit activity
    JavaScript 0 0 0 0 Updated Mar 18, 2024
  • empanada Public

    Panoptic segmentation algorithms for 2D and 3D electron microscopy images

    volume-em/empanada’s past year of commit activity
    Python 2 GPL-2.0 1 4 2 Updated Feb 25, 2023
  • cem-dataset Public

    Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.

    volume-em/cem-dataset’s past year of commit activity
    Jupyter Notebook 26 BSD-3-Clause 1 0 1 Updated Dec 30, 2022
  • zooniverse-tools Public

    Scripts and notebooks for data wrangling from Zooniverse.

    volume-em/zooniverse-tools’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 13, 2022
  • volume-em.github.io Public

    Projects developed for the volume EM community

    volume-em/volume-em.github.io’s past year of commit activity
    2 0 0 0 Updated Oct 7, 2022
  • scikit-image Public Forked from scikit-image/scikit-image

    Image processing in Python

    volume-em/scikit-image’s past year of commit activity
    Python 0 2,278 0 0 Updated Jun 3, 2022
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