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@vivarium-collective

Vivarium Collective

home of the vivarium core engine and project ecosystem

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  1. vivarium-core vivarium-core Public

    Core Interface and Engine for Vivarium

    Python 22 2

  2. bigraph-schema bigraph-schema Public

    compositional type schemas

    Python 1

  3. process-bigraph process-bigraph Public

    Jupyter Notebook 2

  4. bigraph-viz bigraph-viz Public

    visualization tool for bigraph schema

    Jupyter Notebook

Repositories

Showing 10 of 36 repositories
  • vivarium-collective.github.io Public
    vivarium-collective/vivarium-collective.github.io’s past year of commit activity
    HTML 0 0 1 0 Updated Jul 17, 2024
  • process-bigraph Public
    vivarium-collective/process-bigraph’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 29 0 Updated Jul 16, 2024
  • bigraph-schema Public

    compositional type schemas

    vivarium-collective/bigraph-schema’s past year of commit activity
    Python 1 Apache-2.0 0 35 0 Updated Jul 16, 2024
  • VivaComets Public

    Implementing the COMETS modeling methodology with Vivarium.

    vivarium-collective/VivaComets’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 16, 2024
  • bigraph-viz Public

    visualization tool for bigraph schema

    vivarium-collective/bigraph-viz’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 1 Updated Jul 12, 2024
  • vivarium-simservice Public
    vivarium-collective/vivarium-simservice’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 12, 2024
  • biosimulator-processes Public

    Core implementations of simulator processes using the process-bigraph Process API

    vivarium-collective/biosimulator-processes’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Jul 11, 2024
  • hypoxia-oscillations Public
    vivarium-collective/hypoxia-oscillations’s past year of commit activity
    Jupyter Notebook 0 1 0 1 Updated Jun 18, 2024
  • bio-assist Public

    OpenAI and LLM browser based biological modeling and simulation assistant.

    vivarium-collective/bio-assist’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Jun 11, 2024
  • biosimulator-processes-api Public

    REST API which interacts with the biosimulator-processes tooling.

    vivarium-collective/biosimulator-processes-api’s past year of commit activity
    Python 0 0 0 0 Updated May 17, 2024
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