fix name mode in dumbbbell

.gitignore

@@ -0,0 +1,8 @@
+/references
+.vscode
+.DS_Store
+
+api.service
+frontend.service
+
+.venv/

LICENSE.md

@@ -0,0 +1,29 @@
+BSD 3-Clause License
+
+Copyright (c) 2022, University of Utah
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

README.md

@@ -0,0 +1,68 @@
+# Sanguine Visualization Project 
+
+This project is a collaboration between VDL and ARUP at University of Utah. We visualize blood usage in cardiac surgeries and associated patient and surgery attributes. Through this interactive visualization tool, we hope to offer clinical practitioners a better overall view on the use of blood, thus facilitating better patient outcomes. 
+
+![Interface image](https://vdl.sci.utah.edu/assets/images/publications/2021_ivi_sanguine/2021_ivi_sanguine_interface.png)
+
+
+## Table of Contents
+
+1. [Access Sanguine on CHPC at Utah](#access-sanguine-on-chpc-at-utah)
+1. [Quick start guide](#quick-start-guide)
+    - [Start the server](#start-the-server)
+    - [Start the frontend](#start-the-frontend)
+1. [Deployment docs](#deployment-docs)
+
+
+## Access Sanguine on CHPC at Utah
+
+To use this, make sure you are on the campus network. If off-campus, use a VPN that ends in utah.edu. Navigate to https://bloodvis.chpc.utah.edu.
+
+We restrict who can access this application through Utah's CAS server, using duo two-factor authentication. If you need access to this application, please reach out to the developers.
+
+
+## Quick start guide
+
+### Start the server
+
+1. `cd` to the backend folder
+1. Configure your .env file with the correct parameters based on the the .env.default
+1. Configure the credentials you'll be using to connect to the database.
+1. Run `pipenv install`
+1. Run `pipenv run serve`
+
+### Start the frontend
+
+1. `cd` to the frontend folder
+1. Configure your .env file with the correct parameters based on the the .env.default
+1. Run `yarn install`
+1. Run `yarn start`
+
+
+## Deployment docs
+
+Link the systemd service files to the correct place for the user
+
+```
+# First time set up
+# systemctl enable $(pwd)/api.service
+sudo systemctl status api.service
+sudo systemctl start api.service
+
+ln -s ../ANESTH_LOOKUP_040422.csv backend/api/ANESTH_LOOKUP_040422.csv
+ln -s ../SURGEON_LOOKUP_040422.csv backend/api/SURGEON_LOOKUP_040422.csv
+ln -s ../data_dictionary.csv backend/api/data_dictionary.csv
+ln -s ../cpt_codes_cleaned.csv backend/api/cpt_codes_cleaned.csv
+
+# Start/restart the frontend
+cd frontend
+/usr/bin/scl enable rh-nodejs10 -- yarn
+/usr/bin/scl enable rh-nodejs10 -- yarn build
+sudo /usr/bin/rsync -av /uufs/chpc.utah.edu/common/HIPAA/IRB_00124248/deployed-app/bloodvis/frontend/build/* /var/www/html
+sudo /usr/bin/chown -R apache. /var/www/html
+sudo systemctl restart httpd24-httpd
+
+# Restart the api
+sudo systemctl restart api.service
+```
+

backend/.env.default

@@ -0,0 +1,14 @@
+LD_LIBRARY_PATH=/usr/local/pkg/sqlite/std/lib/
+REQUIRE_LOGINS=False
+DJANGO_SECRET_KEY=this-is-not-secret
+DJANGO_DEBUG=True
+
+MYSQL_USER=
+MYSQL_PASS=
+MYSQL_HOST=
+MYSQL_PORT=
+MYSQL_DB=
+
+ORACLE_HOST=
+ORACLE_PORT=
+ORACLE_SERVICE_NAME=

backend/.gitignore

@@ -1,2 +1,11 @@
 credential.json
-data.json
+data.json
+api/db.sqlite3
+api/static
+*.DS_Store
+*.coverage
+.env
+.env.prod
+api/api/tests.py
+sanguine.log*
+*.bak

backend/ANESTH_LOOKUP_040422.csv

@@ -0,0 +1,103 @@
+ANESTH_PROV_DWID,ANEST_LAST_NAME,ANEST_FIRST_NAME,ANEST_MIDDLE
+294022,BOTT,STEVEN,I
+663408,NEWBERRY,CYNTHIA,M
+284740,BEHRENS,MICHAEL,N
+277858,COYLE,DUSTIN,E
+284050,CALL,TYLER,R
+292827,JOHNSON,KENWARD,B
+662448,SKAGGS,JOHN,D
+278388,OVERTON,SEAN,D
+293840,PORTH,JEFFERY,D
+3576962,JESSOP,KATHERINE,MARIE
+5744105,FALK,DANIEL,J
+278962,TADLER,SCOTT,C
+6210919,WAGNER,MICHAEL,J
+278879,HOPF,HARRIET,DW
+1199736,DESSO,REBECCA,R
+292934,WETHINGTON,KEVIN,L
+5736249,KONIUCH,KATHERINE,L
+279079,CHORTKOFF,BEN,S
+1024182,PECHA,TRAVIS,J
+297343,KNECHT,LAUREN,E
+1023328,FARRAR,JESSICA,L
+278465,THACKERAY,ELIZABETH,MERRILL
+280151,WARRIER,SMITHA,
+293371,OGDEN,L,LAZARRE
+2861685,VEDDER,BRIDGET,K
+658002,HARIG,JASON,P
+279685,MORGAN,DAVID,E
+293397,HARRIS,MARK,J
+685356,ALLEN,SCOTT,G
+3478841,CAMPBELL,BLAKE,A
+278247,DILLON,JEFFREY,DAVID
+662456,HORN,JEFFREY,B
+283570,RICHARDSON,SCOTT,P
+291755,CLARK,NORMAN,JAMES
+6175077,SAMS,STEPHEN,H
+279416,JUNKINS,SCOTT,R
+1022272,ODELL,DANIEL,W
+280333,ORGAIN,NATHAN,G
+278789,CHRISTENSEN,CLINT,L
+6283759,ROLLINS,MARK,D
+279681,AXELROD,DEBORAH,A
+1019661,JACKMAN,CARINA,M
+277825,BANKHEAD,BYRON,R
+6726985,TAYLOR,NORMAN,E
+2939485,BEHRENS,CHRISTOPHER,J
+684439,ROMANELLI-GOBBI,MASSIMILIANO,
+296713,MORRISSEY,CANDICE,K
+297383,PULSIPHER,DANIEL,J
+278223,ZIMMERMAN,JOSHUA,M
+279950,SILVERTON,NATALIE,A
+279922,PELEGRIN,PETER,C
+278341,DECOU,JENNIFER,A
+1022265,LEE,JAMES,P
+271525,JESSOP,JACOB,E
+2939507,CHANG,JEN,
+293632,LOOSE,EVELYN,C
+1024223,WARRICK,CHRISTINE,M
+294496,BROGAN,SHANE,E
+278965,LIU,PETER,S
+280817,SPERRY,RICHARD,J
+297404,BELZER,JENNIFER,S
+5714245,JENKINSON,ROBERT,H
+277352,SMITH,DAVID,WARNER
+279407,GNADINGER,PHILIP,N
+293573,RUNNELS,SEAN,T
+658005,HEATH,ELISE,J
+279917,BECK,MICHAEL,M
+279791,CURTIS,MICHELLE,C
+278647,GALAVIZ,CHARLES,E
+284799,EGAN,TALMAGE,D
+278597,STEHLIKOVA,ZUZANA,
+294580,ROUSSEL,DANIELLE,L
+280200,BIRGENHEIER,NATHANIEL,M
+279532,BLEDSOE,AMBER,D
+11751966,MOORE,BRAD,P
+5736115,DORSEY,DAVID,P
+297214,MORGAN,JOHN,S
+5736920,MEIER,ADAM,W.
+280260,HAGN,EMILY,E
+280274,HOLMBERG,TIMOTHY,J
+6202108,POLLOCK,KIMBERLY,A
+3478920,HANSEN,BRADLEY,E
+5745004,NGUYEN,LINDA,N
+5586160,CHANG,CANDACE,C
+5745009,POLLARD,JACOB,E
+279801,LARSON,ADAM,L
+279686,WHITTINGHAM,SARA,A
+289213,LU,JEFFREY,K
+809523,MONTZINGO,CANDICE,R
+278833,DESJARDINS,GEORGES,
+279123,BAKKE,PATRICK,G
+684972,ALLEN,RACHEL,H
+277237,GRIFFEE,MATTHEW,J
+685387,MCCONVILLE,SARAH,SPERRY
+11754166,SANFORD,KELSEY,M
+876871,DRENNAN,EMILY,L
+5606865,BORGMEIER,EMILEE,L
+297367,GERA,PAUL,M
+3423601,ROSENBERGER,DOROTHEA,S
+3441708,BENSON,MICHAEL,J
+5652797,GUENZER,JOSEPH,R
+765548,BUYS,MICHAEL,J

backend/Pipfile

@@ -3,12 +3,29 @@ name = "pypi"
 url = "https://pypi.org/simple"
 verify_ssl = true
 
+[requires]
+python_version = "3.6"
+
 [dev-packages]
+pylint = "*"
 
 [packages]
 cx-oracle = "*"
 flask = "*"
 flask-cors = "*"
+django = "~=3.2"
+django-cors-headers = "*"
+coverage = "*"
+gunicorn = "*"
+mysqlclient = "*"
+django-cas-ng = "==4.1.1"
 
 [scripts]
-serve = "python app.py"
+collectstatic = "python api/manage.py collectstatic"
+coverage-report = "coverage report"
+coverage-test = "coverage run --source='./api' api/manage.py test api"
+makemigrations = "python api/manage.py makemigrations api"
+migrate = "python api/manage.py migrate"
+serve = "python api/manage.py runserver"
+deploy = "python -c 'import os; os.chdir(\"api\"); os.system(\"gunicorn api.wsgi\")'"
+test = "python -c 'import os; os.system(\"pipenv run coverage-test ; pipenv run coverage-report\")'"