Project co-developed with Jeong-Woo Kim and Yue Liu
ssm package modified from original source here: https://github.com/lindermanlab/ssm
git clone https://github.com/lindermanlab/ssm
cd ssm
pip install numpy cython
pip install -e .
fitModel.py
- fits HLM-GLM model to data in rawData/inputs/
- writes saved model to rawData/modelSaves/
analyzeFits.py
- runs all analysis (choice and transition probabilities, category analysis, inter-species performance comparison)
- writes results to analysis/
predictObject.ipynb
- reads files from rawData/forObjectPred/ and analysis/ (created by analyzeFits.py)
- processes, statistically tests and visualizes results
Fig<1-7>.ipynb
- reads files from analysis/
- processes, statistically tests and visualizes results
- saves figures in .eps format to figures/