edit workflow to ensure r 4.4

vbaliga · Jul 30, 2024 · dcdd346 · dcdd346
1 parent 798c6e4
commit dcdd346
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diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
@@ -1,38 +1,38 @@
-name: Render and deploy Quarto
-
-on:
-  push:
-    branches: main
-
-jobs:
-  build-deploy:
-    runs-on: ubuntu-latest
-    permissions:
-      contents: write
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v2
-
-      - name: Set up Quarto
-        uses: quarto-dev/quarto-actions/setup@v2
-
-      - name: Install R
-        uses: r-lib/actions/setup-r@v2
-        with:
-          r-version: '4.2.0'
-
-      - name: Install R Dependencies
-        uses: r-lib/actions/setup-renv@v2
-        with:
-          cache-version: 1
-
-      - name: Install curl for Bioconductor
-        run: |
-          sudo apt -y install libcurl4-openssl-dev
-      
-      - name: Render and Publish
-        uses: quarto-dev/quarto-actions/publish@v2
-        with:
-          target: gh-pages
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+name: Render and deploy Quarto
+
+on:
+  push:
+    branches: main
+
+jobs:
+  build-deploy:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v2
+
+      - name: Set up Quarto
+        uses: quarto-dev/quarto-actions/setup@v2
+
+      - name: Install R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: '4.4.0'
+
+      - name: Install R Dependencies
+        uses: r-lib/actions/setup-renv@v2
+        with:
+          cache-version: 1
+
+      - name: Install curl for Bioconductor
+        run: |
+          sudo apt -y install libcurl4-openssl-dev
+      
+      - name: Render and Publish
+        uses: quarto-dev/quarto-actions/publish@v2
+        with:
+          target: gh-pages
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}