A solution for the package dependency issues 📦 #109
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Package dependency issues.
Package dependency issues.
For unified package installation.
Fix for logging issue for joint Protein-RNA MSA
Better file naming and matches call in `run_RF2NA.sh`. Fix for uninitialized use of `is_ignore`.
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As of 2024-04-25, the main branch has issues with unmet package dependencies, some examples below:
NVTX functions not installedCannot load Graphbolt C++ libraryMissing packages such as
torchdata,pandasandpydanticThese issues have been documented at least in #105, #104, #99, #94, #93, #37, #36 and #33.
The
create_env.shscript takes care of dependencies in RF2na-linux.yml and SE3Transformer/requirements.txt i.e., a unified solution.Developed and tested on
OS: Ubuntu 22.04.4 LTS
Nvidia Driver: 550.54.15
CUDA: 12.4
conda: 24.3.0
README has been updated to reflect the simplified package installation.
Documented are the conda YAML and conda table of packages.
Hope this is helpful.