Add first Rust tools

.github/workflows/rust.yml

@@ -0,0 +1,70 @@
+on:
+  pull_request:
+
+permissions:
+  pull-requests: write
+  checks: write
+
+env:
+  CACHE_KEY: CI
+
+jobs:
+  dependencies:
+    name: Install dependencies
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      - uses: Swatinem/rust-cache@v2
+        id: cache
+        with:
+          shared-key: ${{ env.CACHE_KEY }}
+      - run: cd scripts/helper_scripts/unipept-database-rs && cargo fetch
+        if: ${{ !steps.cache.outputs.cache-hit }}
+
+  build:
+    name: Build binaries
+    runs-on: ubuntu-latest
+    needs: [dependencies]
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      - uses: Swatinem/rust-cache@v2
+        with:
+          shared-key: ${{ env.CACHE_KEY }}
+      - run: cd scripts/helper_scripts/unipept-database-rs && cargo build --release
+
+  format:
+    name: Check formatting
+    runs-on: ubuntu-latest
+    needs: [dependencies]
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+        with:
+          components: rustfmt
+      - uses: Swatinem/rust-cache@v2
+        with:
+          shared-key: ${{ env.CACHE_KEY }}
+      - run: cd scripts/helper_scripts/unipept-database-rs && cargo fmt --all --check
+
+  lint:
+    name: Linting
+    runs-on: ubuntu-latest
+    needs: [dependencies]
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+        with:
+          components: clippy
+      - uses: Swatinem/rust-cache@v2
+        with:
+          shared-key: ${{ env.CACHE_KEY }}
+      - uses: giraffate/clippy-action@v1
+        with:
+          clippy_flags: -- -D warnings
+          reporter: 'github-pr-check'
+          fail_on_error: true
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          workdir: scripts/helper_scripts/unipept-database-rs
+

.gitignore

@@ -17,3 +17,5 @@ data/
 out
 scripts/helper_scripts/parser/output
 scripts/helper_scripts/parser/src/META-INF
+.idea/
+

LICENSE

@@ -0,0 +1,22 @@
+MIT License
+
+Copyright (c) 2023 Universiteit Gent
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+

scripts/helper_scripts/unipept-database-rs/.gitignore

@@ -0,0 +1,14 @@
+### Rust template
+# Generated by Cargo
+# will have compiled files and executables
+debug/
+target/
+
+# These are backup files generated by rustfmt
+**/*.rs.bk
+
+# MSVC Windows builds of rustc generate these, which store debugging information
+*.pdb
+
+# RustRover, CLion and IntelliJ
+.idea/