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cli: remove default log value
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pdiakumis committed Nov 22, 2023
1 parent edb0a96 commit dd8910e
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion inst/cli/rnasum.R
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ option_list <- list(
make_option("--drugs", action = "store_true", help = "Include drug matching section in report."),
make_option("--filter", action = "store_true", help = "Filter out low expressed genes."),
make_option("--immunogram", action = "store_true", help = "Include immunogram in report."),
make_option("--log", action = "store_true", default = TRUE, help = "Log2 transform data before normalisation."),
make_option("--log", action = "store_true", help = "Log2 transform data before normalisation."),
make_option("--manta_tsv", type = "character", help = "File path to umccrise 'manta.tsv' output."),
make_option("--norm", type = "character", help = "Normalisation method."),
make_option("--pcgr_splice_vars", action = "store_true", help = "Include non-coding splice region variants reported in PCGR."),
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