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install pygris #6

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1563e33
install pygris
dtandersen Jan 5, 2025
f716bbe
added shap
dtandersen Jan 5, 2025
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8 changes: 3 additions & 5 deletions Dockerfile
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Expand Up @@ -21,12 +21,12 @@ RUN jupyter labextension install @dafeliton/jupyterlab-notebookparams
RUN pip uninstall pillow fiona -y && \
pip install -r ~/requirements.txt && \
pip install --upgrade fiona

# pygeos is deprecated and has been merged with shapely. (pygeos works around python GIL)
# https://github.com/shapely/shapely

# geopandas/cartopy/etc. error when importing sqlite3 from python:
# ImportError: /opt/conda/lib/python3.11/lib-dynload/_sqlite3.cpython-311-x86_64-linux-gnu.so: undefined symbol: sqlite3_deserialize
# ImportError: /opt/conda/lib/python3.11/lib-dynload/_sqlite3.cpython-311-x86_64-linux-gnu.so: undefined symbol: sqlite3_deserialize
# Moved to requirements.txt

RUN mamba install -c esri arcgis arcgis-mapping -y && \
Expand All @@ -36,7 +36,7 @@ RUN mamba install -c esri arcgis arcgis-mapping -y && \

RUN pip install --upgrade pip setuptools wheel
RUN pip install --upgrade nbconvert

RUN pip install numpy==1.26.4 pygris shap

# RUN pip install "numpy<2"

Expand All @@ -46,5 +46,3 @@ COPY arcgis_test.ipynb /opt
RUN rm -rf /home/jovyan/requirements.txt

ENV USE_PYGEOS=0

RUN pip install numpy==1.26.4
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