CI #343
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| schedule: | |
| - cron: '0 10 * * 0' # every Sunday at 10am | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| tags: | |
| - '*.*.*' | |
| pull_request: | |
| env: | |
| docker_repository: tschaffter/rstudio | |
| # github.event.repository.clone_url not available for on: schedule | |
| clone_url: https://github.com/tschaffter/rstudio.git | |
| # github.event.repository.default_branch not available for on: schedule | |
| default_branch: main | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Lint Dockerfiles | |
| uses: docker://hadolint/hadolint:latest | |
| with: | |
| entrypoint: hadolint | |
| args: Dockerfile | |
| - name: Check that packages in requirements.txt files are in asc order | |
| run: | | |
| sort -f --check conda/sage-bionetworks/requirements.txt | |
| test: | |
| needs: [lint] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set environment variables | |
| run: | | |
| cp .env.example .env | |
| export $(grep -v '^#' .env | xargs -d '\n') | |
| - name: Validate docker-compose.yml | |
| run: docker-compose -f docker-compose.yml config >/dev/null | |
| build-and-publish: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Prepare build | |
| id: prep | |
| run: | | |
| DOCKER_IMAGE=${{ env.docker_repository }} | |
| VERSION=noop | |
| PUSH_IMAGE=false | |
| PUSH_NOTEBOOKS=false | |
| if [ "${{ github.event_name }}" = "schedule" ]; then | |
| VERSION=weekly | |
| PUSH_IMAGE=true | |
| PUSH_NOTEBOOKS=true | |
| elif [[ $GITHUB_REF == refs/tags/* ]]; then | |
| # VERSION=${GITHUB_REF#refs/tags/} | |
| VERSION=$(cat RSTUDIO_VERSION) | |
| elif [[ $GITHUB_REF == refs/heads/* ]]; then | |
| VERSION=$(echo ${GITHUB_REF#refs/heads/} | sed -r 's#/+#-#g') | |
| if [ "${{ github.event.repository.default_branch }}" = "$VERSION" ]; then | |
| VERSION=edge | |
| PUSH_IMAGE=true | |
| PUSH_NOTEBOOKS=true | |
| fi | |
| elif [[ $GITHUB_REF == refs/pull/* ]]; then | |
| VERSION=pr-${{ github.event.number }} | |
| PUSH_IMAGE=false | |
| PUSH_NOTEBOOKS=true | |
| fi | |
| TAGS="${DOCKER_IMAGE}:${VERSION}" | |
| if [[ $VERSION =~ ^[0-9]{1,3}\.[0-9]{1,3}\.[0-9]{1,3}$ ]]; then | |
| MINOR=${VERSION%.*} | |
| MAJOR=${MINOR%.*} | |
| TAGS="$TAGS,${DOCKER_IMAGE}:${MINOR}" | |
| TAGS="$TAGS,${DOCKER_IMAGE}:${MAJOR}" | |
| TAGS="$TAGS,${DOCKER_IMAGE}:latest" | |
| TAGS="$TAGS,${DOCKER_IMAGE}:${VERSION}-${GITHUB_SHA::8}" | |
| PUSH_IMAGE=true | |
| PUSH_NOTEBOOKS=true | |
| # elif [ "${{ github.event_name }}" = "push" ]; then | |
| # TAGS="$TAGS,${DOCKER_IMAGE}:sha-${GITHUB_SHA::8}" | |
| fi | |
| echo ::set-output name=version::${VERSION} | |
| echo ::set-output name=version_major::${MAJOR} | |
| echo ::set-output name=version_minor::${MINOR} | |
| echo ::set-output name=tags::${TAGS} | |
| echo ::set-output name=created::$(date -u +'%Y-%m-%dT%H:%M:%SZ') | |
| echo ::set-output name=push_image::${PUSH_IMAGE} | |
| echo ::set-output name=push_notebooks::${PUSH_NOTEBOOKS} | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v1 | |
| - name: Set up Docker Buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v1 | |
| - name: Cache Docker layers | |
| uses: actions/cache@v2 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ runner.os }}-single-buildx-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-single-buildx | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build image | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| file: Dockerfile | |
| builder: ${{ steps.buildx.outputs.name }} | |
| load: true | |
| push: false | |
| platforms: linux/amd64 | |
| tags: rstudio-cached:latest | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache-new | |
| - name: Create .env | |
| run: | | |
| cp .env.example .env | |
| printf "%s\n" \ | |
| "PASSWORD=${{ secrets.RSTUDIO_PASSWORD }}" \ | |
| "USERID=$(id -u)" \ | |
| "GROUPID=$(id -g)" \ | |
| "SYNAPSE_TOKEN=${{ secrets.SYNAPSE_TOKEN }}" | tee -a .env >/dev/null | |
| - name: Generate HTML notebooks | |
| run: | | |
| rm -fr $(pwd)/notebooks/examples/synapse.Rmd | |
| docker run --rm \ | |
| --env-file .env \ | |
| -v $(pwd)/notebooks:/data \ | |
| rstudio-cached:latest \ | |
| render /data/examples/*.Rmd | |
| - name: Push image | |
| if: steps.prep.outputs.push_image == 'true' | |
| id: docker_push | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| file: Dockerfile | |
| builder: ${{ steps.buildx.outputs.name }} | |
| push: true | |
| platforms: linux/amd64,linux/arm64 | |
| tags: ${{ steps.prep.outputs.tags }} | |
| labels: | | |
| org.opencontainers.image.created=${{ steps.prep.outputs.created }} | |
| org.opencontainers.image.source=${{ github.repositoryUrl }} | |
| org.opencontainers.image.version=${{ steps.prep.outputs.version }} | |
| org.opencontainers.image.revision=${{ github.sha }} | |
| org.opencontainers.image.licenses=${{ github.event.repository.license.name }} | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache-new | |
| # - name: Update Docker Hub repository description | |
| # if: steps.prep.outputs.push_image == 'true' | |
| # uses: peter-evans/dockerhub-description@v2 | |
| # with: | |
| # username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| # password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| # repository: ${{ env.docker_repository }} | |
| - name: Prepare to publish HTML notebooks to GH Pages | |
| if: steps.prep.outputs.push_notebooks == 'true' | |
| run: | | |
| git clone ${{ env.clone_url }} \ | |
| --branch gh-pages --single-branch gh-pages | |
| # Update gh-pages: version specified | |
| NOTEBOOKS_TARGET_DIR=gh-pages/${{ steps.prep.outputs.version }}/notebooks | |
| rm -fr ${NOTEBOOKS_TARGET_DIR} | |
| mkdir -p ${NOTEBOOKS_TARGET_DIR} | |
| cp -R notebooks/examples/*.html ${NOTEBOOKS_TARGET_DIR} | |
| # Update gh-pages: latest, major, and minor versions | |
| if [ ! -z "${{ steps.prep.outputs.version_major }}" ]; then | |
| # Update latest (e.g. "1.2.3" => "latest") | |
| NOTEBOOKS_TARGET_DIR=gh-pages/latest/notebooks | |
| rm -fr ${NOTEBOOKS_TARGET_DIR} | |
| mkdir -p ${NOTEBOOKS_TARGET_DIR} | |
| cp -R notebooks/examples/*.html ${NOTEBOOKS_TARGET_DIR} | |
| # Update major version (e.g. "1.2.3" => "1") | |
| NOTEBOOKS_TARGET_DIR=gh-pages/${{ steps.prep.outputs.version_major }}/notebooks | |
| rm -fr ${NOTEBOOKS_TARGET_DIR} | |
| mkdir -p ${NOTEBOOKS_TARGET_DIR} | |
| cp -R notebooks/examples/*.html ${NOTEBOOKS_TARGET_DIR} | |
| # Update minor version (e.g. "1.2.3" => "1.2") | |
| NOTEBOOKS_TARGET_DIR=gh-pages/${{ steps.prep.outputs.version_minor }}/notebooks | |
| rm -fr ${NOTEBOOKS_TARGET_DIR} | |
| mkdir -p ${NOTEBOOKS_TARGET_DIR} | |
| cp -R notebooks/examples/*.html ${NOTEBOOKS_TARGET_DIR} | |
| fi | |
| cd gh-pages | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add . | |
| git commit -m "Update notebooks" -a || true | |
| # The above command will fail if no changes were present, so we ignore | |
| # that. | |
| - name: Push to gh-pages | |
| if: steps.prep.outputs.push_notebooks == 'true' | |
| uses: ad-m/github-push-action@master | |
| with: | |
| branch: gh-pages | |
| directory: gh-pages | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| force: true |