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Add t8code baroclinic instability test case #199

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Add t8code baroclinic instability test case #199

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@benegee benegee commented Jul 24, 2024 •
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Proof of concept for MESSy coupling.

benegee and others added 30 commits February 22, 2024 17:49
@benegee
add getter for number of dofs
d5ecc49
@benegee
change trixi_load_cell_average
72709e5 
add parameter index and only get averaged of the variable at position index
@benegee
fix: ensure Int32
71ba4bf
@benegee
adapt reference value
9c83b05
@benegee
add getter for all dofs values
5b3960b
@benegee
adapt next value
3e31f4a
@benegee
add trixi_store_in_database
2d45c62 
proof of concept for creating data vectors in libelixirs which can be
filled later by external applications
@benegee
add trixi_ndofs_element
92d817a
@benegee
add tests
530f5cc
@benegee
add missing parts in tests
c7d38d4
@benegee
fix tests
ba00c6f
@benegee
deallocate first
cdf6e5e
@benegee
add trixi_load_prim to Fortran API
aa6d8c7
@benegee
reference value
cf43795
@benegee
get doxygen right
dda491a
@sloede
Merge branch 'main' into more-data-access
35513ac
@benegee
Merge branch 'main' into bg/store-in-database
bf0b732
@benegee
add trixi_get_time, trixi_load_node_coordinates
b864850 
required in this PR, subject to change
@benegee
implement source terms controller
9430f2d 
demonstrates source terms via database
@benegee
libelixir with source terms via database
5956a78
@benegee
change Array to Vector
ccd23fc
@benegee
spelling
1be73d9
@benegee
libelixir for baroclinic instability
584a674
@benegee
remove method only required by steady state correction
7c82c90
@benegee @sloede
Update LibTrixi.jl/examples/libelixir_p4est3d_euler_baroclinic_instab…
d1850a7 
…ility.jl

Co-authored-by: Michael Schlottke-Lakemper <[email protected]>
@benegee
Merge branch 'main' into bg/baroclinic-instability
fd103d9
@benegee
Merge branch 'more-data-access' into bg/store-in-database
6170610
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Merge branch 'more-data-access' of github.com:trixi-framework/libtrix…
94cc1c7 
…i into more-data-access
@benegee
make everything more consistent!
7dbb2c6
@benegee
use const double *
7906080
benegee and others added 17 commits March 11, 2024 10:48
@benegee
Merge branch 'main' into more-data-access
ff6ac54
@sloede
Merge branch 'main' into more-data-access
dfea9e4
@benegee
Merge branch 'bg/store-in-database' of github.com:trixi-framework/lib…
017e166 
…trixi into bg/store-in-database
@benegee
Merge branch 'main' into more-data-access
f534175
@benegee
Merge branch 'more-data-access' into bg/store-in-database
8b6a81f
@benegee
missed merge conflict
f96436b
@benegee
transpose calloc args
b76ca70
@benegee
Merge branch 'main' into more-data-access
37b88a1
@benegee
Merge branch 'more-data-access' into bg/store-in-database
95ba0cc
@benegee
Merge branch 'bg/store-in-database' into bg/baroclinic-instability
44ffad8
@benegee
add functions to get quadrature information
b40a2a1
@benegee
update CI badge URL
e4d6901
@benegee
Merge branch 'main' into more-data-access
66ee664
@benegee
Merge branch 'more-data-access' into bg/store-in-database
3f665f0
@benegee
remove load_node_coordinates
3a0387b
@benegee
Merge branch 'bg/store-in-database' into bg/baroclinic-instability
49394c7
@benegee
add baroclinic instability elixir and controller
9bc76b4
@benegee benegee marked this pull request as draft July 24, 2024 21:33
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benegee commented Jul 25, 2024 •
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How to

  • Build and install t8code
    • must be version 2.0.0 or main
    • for Fortran interface:
      • start with main
      • git merge origin/fortran-interface
      • git merge origin/fortran-build
      • in api/Makefile.am rename t8_fortran_interface.f90 to t8_mo_fortran_interface.f90
      • in t8_fortran_specific.mk replace $(FC_MODEXT) with mod
      • in t8_fortran_specific.mk delete the whole if T8_WITH_MODDIR ... endif block
      • configure (with --enable-mpi, --enable-fortran), build and install
  • Build and install libtrixi
    • needs this branch: bg/baroclinic-instability
    • e.g. cmake -DCMAKE_INSTALL_PREFIX=~/install/libtrixi-baro -DCMAKE_BUILD_TYPE=DEBUG -DT8CODE_PREFIX=~/install/t8code_fortran ..
  • Build julia project
    • cd libtrixi-julia-baro
    • e.g. ./libtrixi-baro/bin/libtrixi-init-julia --t8code-library ../t8code_fortran/lib/libt8.so ../libtrixi-baro
    • JULIA_DEPOT_PATH=./julia-depot julia --project=.
    • Package manager ]
    • pkg> dev --local Trixi
    • leave Julia, cd dev/Trixi, git switch feature-t8code-cubed-sphere-setup, cd -
    • JULIA_DEPOT_PATH=./julia-depot julia --project=.
    • Package manager ]
    • update
    • maybe downgrade XML2_jll: add [email protected]
    • precompile
  • Run test case
    • cd libtrixi-baro
    • LIBTRIXI_DEBUG=all ./bin/trixi_controller_baroclinic_c ../libtrixi-julia-baro ./share/libtrixi/LibTrixi.jl/examples/libelixir_t8code3d_euler_baroclinic_instability.jl

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@benegee @sloede