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Update Michael's affiliation to U of Augsburg (#126) #421

Update Michael's affiliation to U of Augsburg (#126)

Update Michael's affiliation to U of Augsburg (#126) #421

Workflow file for this run

name: CI
on:
push:
branches:
- main
paths-ignore:
- 'LICENSE.md'
- 'README.md'
- '.github/workflows/CompatHelper.yml'
- '.github/workflows/DocPreviewCleanup.yml'
- '.github/workflows/TagBot.yml'
pull_request:
paths-ignore:
- 'LICENSE.md'
- 'README.md'
- '.github/workflows/CompatHelper.yml'
- '.github/workflows/DocPreviewCleanup.yml'
- '.github/workflows/TagBot.yml'
workflow_dispatch:
# Cancel redundant CI tests automatically
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
test:
if: "!contains(github.event.head_commit.message, 'skip ci')"
name: ${{ matrix.os }} - ${{ matrix.JULIA_P4EST_TEST }} - Julia ${{ matrix.version }}
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
version:
- '1.6'
- '1'
# - 'nightly'
os:
- ubuntu-latest
- macos-latest
- windows-latest
arch:
- x64
JULIA_P4EST_TEST:
- P4EST_JLL_MPI_DEFAULT
- P4EST_CUSTOM_MPI_CUSTOM
exclude:
# Some preferences are not loaded in package tests in older versions
# of Julia, see
# https://github.com/JuliaPackaging/Preferences.jl/issues/40
# Thus, we need to disable this setup in CI.
- version: '1.6'
JULIA_P4EST_TEST: P4EST_CUSTOM_MPI_CUSTOM
# Run only selected tests on macOS and Windows, since not everything
# works everywhere yet and we are most familiar with setting up custom
# p4est and MPI builds on Linux.
- os: macos-latest
JULIA_P4EST_TEST: P4EST_CUSTOM_MPI_CUSTOM
- os: windows-latest
JULIA_P4EST_TEST: P4EST_CUSTOM_MPI_CUSTOM
steps:
- uses: actions/checkout@v4
- name: Set p4est release to run tests against
# We use an older release of `p4est` on purpose than the version
# provided by P4est_jll.jl to check whether everything still works
# in another version of `p4est` than the version used to generate the
# bindings.
run: |
P4EST_RELEASE=2.3.1
echo "P4EST_RELEASE=$P4EST_RELEASE" >> $GITHUB_ENV
echo "P4EST_RELEASE=$P4EST_RELEASE"
shell: bash
- name: Set environment variables
run: |
echo "Setting variables for '${{ matrix.JULIA_P4EST_TEST }}'..."
echo "JULIA_P4EST_TEST=${{ matrix.JULIA_P4EST_TEST }}" >> $GITHUB_ENV
echo "JULIA_P4EST_TEST=${{ matrix.JULIA_P4EST_TEST }}"
if [[ ${{ matrix.JULIA_P4EST_TEST }} == "P4EST_JLL_MPI_DEFAULT" ]]
then
echo "(no additional environment variables required)"
elif [[ ${{ matrix.JULIA_P4EST_TEST }} == "P4EST_CUSTOM_MPI_CUSTOM" ]]
then
P4EST_TMP=`pwd`/libp4est_tmp
echo "P4EST_TMP=$P4EST_TMP" >> $GITHUB_ENV
echo "P4EST_TMP=$P4EST_TMP"
echo "JULIA_P4EST_TEST_LIBP4EST=$P4EST_TMP/prefix/lib/libp4est.so" >> $GITHUB_ENV
echo "$JULIA_P4EST_TEST_LIBP4EST=$P4EST_TMP/prefix/lib/libp4est.so"
echo "JULIA_P4EST_TEST_LIBSC=$P4EST_TMP/prefix/lib/libsc.so" >> $GITHUB_ENV
echo "$JULIA_P4EST_TEST_LIBSC=$P4EST_TMP/prefix/lib/libsc.so"
else
echo "ERROR: unknown test type ${{ matrix.JULIA_P4EST_TEST }}" >&2
exit 1
fi
echo "Done."
shell: bash
- uses: julia-actions/setup-julia@v2
with:
version: ${{ matrix.version }}
arch: ${{ matrix.arch }}
show-versioninfo: true
- uses: julia-actions/cache@v2
- name: Install custom MPI library for testing
run: |
if [[ ${{ matrix.JULIA_P4EST_TEST }} == "P4EST_CUSTOM_MPI_CUSTOM" ]]
then
sudo apt-get install -y openmpi-bin libopenmpi-dev
fi
shell: bash
- name: Install custom p4est library for testing
run: |
./.ci_install_p4est.sh
shell: bash
- name: Configure MPI.jl
shell: julia --color=yes {0}
run: |
@show pwd()
include(joinpath(pwd(), "test", "configure_packages.jl"))
- uses: julia-actions/julia-buildpkg@v1
env:
PYTHON: ""
- uses: julia-actions/julia-runtest@v1
env:
PYTHON: ""
- uses: julia-actions/julia-processcoverage@v1
- uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
files: ./lcov.info # optional
flags: unittests # optional
name: codecov-umbrella # optional
fail_ci_if_error: true # optional (default = false)
# verbose: true # optional (default = false)
# The standard setup of Coveralls is just annoying for parallel builds, see, e.g.,
# https://github.com/trixi-framework/Trixi.jl/issues/691
# https://github.com/coverallsapp/github-action/issues/47
# https://github.com/coverallsapp/github-action/issues/67
# This standard setup is reproduced below for completeness.
# - uses: coverallsapp/github-action@master
# with:
# github-token: ${{ secrets.GITHUB_TOKEN }}
# flag-name: run-${{ matrix.JULIA_P4EST_TEST }}-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.arch }}-${{ github.run_id }}
# parallel: true
# path-to-lcov: ./lcov.info
# Instead, we use a more tedious approach:
# - Store all individual coverage files as artifacts (directly below)
# - Download and merge individual coverage reports in another step
# - Upload only the merged coverage report to Coveralls
- shell: bash
run: |
cp ./lcov.info ./lcov-${{ matrix.JULIA_P4EST_TEST }}-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.arch }}.info
- uses: actions/upload-artifact@v4
with:
name: lcov-${{ matrix.JULIA_P4EST_TEST }}-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.arch }}
path: ./lcov-${{ matrix.JULIA_P4EST_TEST }}-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.arch }}.info
finish:
needs: test
runs-on: ubuntu-latest
steps:
# The standard setup of Coveralls is just annoying for parallel builds, see, e.g.,
# https://github.com/trixi-framework/Trixi.jl/issues/691
# https://github.com/coverallsapp/github-action/issues/47
# https://github.com/coverallsapp/github-action/issues/67
# This standard setup is reproduced below for completeness.
# - name: Coveralls Finished
# uses: coverallsapp/github-action@master
# with:
# github-token: ${{ secrets.GITHUB_TOKEN }}
# parallel-finished: true
# Instead, we use the more tedious approach described above.
# At first, we check out the repository and download all artifacts
# (and list files for debugging).
- uses: actions/checkout@v4
- uses: actions/download-artifact@v4
- run: ls -R
# Next, we merge the individual coverage files and upload
# the combined results to Coveralls.
- name: Merge lcov files using Coverage.jl
shell: julia --color=yes {0}
run: |
using Pkg
Pkg.activate(temp=true)
Pkg.add("Coverage")
using Coverage
coverage = LCOV.readfolder(".")
for cov in coverage
cov.filename = replace(cov.filename, "\\" => "/")
end
coverage = merge_coverage_counts(coverage)
@show covered_lines, total_lines = get_summary(coverage)
LCOV.writefile("./lcov.info", coverage)
- uses: coverallsapp/github-action@v2
with:
github-token: ${{ secrets.GITHUB_TOKEN }}
path-to-lcov: ./lcov.info
# Upload merged coverage data as artifact for debugging
- uses: actions/upload-artifact@v4
with:
name: lcov
path: ./lcov.info
# That's it
- run: echo "Finished testing P4est"