A Snakemake pipeline for copy number variant calling without normal tissue samples
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Updated
Jun 19, 2024 - Python
A Snakemake pipeline for copy number variant calling without normal tissue samples
demo pipeline for testing different data chunking methods for MuTect2
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
Nextflow pipeline for Mutect2 somatic variant calling best practices
GATK 4 Mutect2 Somático
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