Analysis of the human symptoms–disease network

MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)

VerifAI project is NGI Search funded initiative to build open-source biomedical generative question-answering engine with referenced and verifiable answers (using posteriori model)

Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)

Computing term cooccurrence in MEDLINE

Search Workbench is a tool for visually appraising, editing and comparing PubMed searches

Query analysis pipeline framework

Repository of our paper on Self-citation analysis in PubMed data

PubMed/Medline query transpiler

Chart the proportion of MeSH categories is a given PubMed results set

Medline Transpose project

A simple console application that will go through the Medline Pubmed dataset and extract out a given set of fields.

Python scripts for searching Pubmed using Biopython and working with eponymous terms

Medical Subject Heading Exploder

The Corpus Storage System (CoStoSys) is a tool and abstraction layer for a PostgreSQL document database and part of the Jena Document Information System (JeDIS).

A fixed fork of bibutils from sourceforge to process pubmed PMC medline nbib files and convert them into Word Source.xml bibliography file

A VSM-dictionary that uses NCBI's E-utilities API to connect with the PubMed database

Chart the proportion of MeSH subheading in a given PubMed results set

DSL front-end for groove query analysis pipeline