BSR-Based Allele Calling Algorithm
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Updated
Jul 2, 2024 - HTML
BSR-Based Allele Calling Algorithm
Making whole bacterial genome sequencing data analysis easy
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
AMR/VF LGT focused bacterial genomics analysis workflow
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.
Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their origin of replication.
Genomewide Epistasis Analysis on Bacteria
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
DELEAT is a bioinformatic analysis pipeline for the design of large-scale genome deletions in bacterial genomes.
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
Reproducible and comprehensive sequence analyses for single-species bacterial dataset
Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.
Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.
analyzing bacterial genome based ontologies and phylogenomics informativeness
Python scripts that predict and plot the location of the origin of replication (oriC) of circular bacterial genomes based on Z-curve analysis, GC-skew analysis. and certain gene locations
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