Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
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Apr 19, 2023 - R
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18s-rrna
Here are 8 public repositories matching this topic...
Scripts for paper Vaulot et al. 2022
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Dec 13, 2021 - R
This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequen…
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Aug 14, 2018 - Perl
Shiny application to access metaPR2 database
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Feb 16, 2024 - R
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
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Jul 9, 2024 - Shell
An R Shiny application to identify cochineal genetic sequences for 12S rRNA, 18S rRNA, or COI.
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Feb 14, 2022 - R
Datasets and statistics code used for "Objective 1" for PhD Thesis
bioinformatics
pollution
microbiology
ecology
chile
coastal
ppe
oceans
eukaryotes
18s-rrna
picophytoplanktonic
picoeukaryotes
microecology
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Feb 22, 2022 - HTML
A custom bioinformatic workflow for UPDX (Universal Parasite Detection assay) sequences analysis.
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Mar 25, 2022 - R
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