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species v0.8.4

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@tomasstolker tomasstolker released this 28 Jun 07:35
· 15 commits to main since this release
  • Several small fixes in the retrieval framework (thanks @wbalmer!)
  • Added flux_units parameter to get_mcmc_photometry
  • Support for fitting multiple disk_teff and disk_radius parameters in FitModel
  • Support for fitting the combined photometry of unresolved binary stars with different parallaxes
  • Multiple improvements for fitting a combination of two spectra in FitModel
  • Support for flux ratio prior for filters when fitting a binary system
  • Check for NaNs in the uncertainties when adding a spectrum with add_object
  • Updated plot_posterior for showing posteriors from binary systems
  • Returning the individual binary components with get_mcmc_spectra
  • Added support for coolTLUSTY Y dwarf spectra
  • Tutorial for comparing data with a model grid of spectra
  • Support for fitting separate ism_ext parameters for a binary system
  • Support for PHOENIX Husser et al. (2013) models
  • Major refactoring of FitModel, improved extinction accuracy, faster interpolation based on Teff prior
  • Added optional database_file parameter to SpeciesInit
  • Added fixed_param parameter to add_samples
  • Added tag parameter and several improvements in get_residuals
  • Changed the values added with inc_loglike to ln(L)
  • Included chi2 and n_dof in ResidualBox
  • Fixed indentation problem in CompareSpectra
  • Robust implementation for filenames by using the pathlib instead of the os module
  • Using pooch instead of urllib for downloading files
  • Fixed bug in get_samples with reading normal priors
  • Fixed bug with storing the log-likelihood after running run_multinest
  • Fixed Windows issue with the Linder et al. (2019) isochrones
  • Check for NaN and inf when calculating the goodness-of-fit statistic in CompareSpectra
  • Exclude SpeX spectra that can not be flux calibrated when adding with add_spectra
  • Updated dependency versions
  • Overall code maintenance, many minor improvements, and updated tutorials