Removed dependency versions from requirements.txt apart from NumPy, a…

…dd AF Lep b and HD 206893 c to companion_data, added some ages and updated semi-major axis to companion_data, changed scipy.integrate.simps to simpson, removed Exo-Rem warning

docs/tutorials/companion_data.ipynb

@@ -63,7 +63,7 @@
      "output_type": "stream",
      "text": [
       "==============\n",
-      "species v0.8.3\n",
+      "species v0.8.4\n",
       "==============\n",
       "\n",
       "Working folder: /Users/tomasstolker/applications/species/docs/tutorials\n",
@@ -83,7 +83,7 @@
     {
      "data": {
       "text/plain": [
-       "<species.core.species_init.SpeciesInit at 0x1453dacd0>"
+       "<species.core.species_init.SpeciesInit at 0x11416f2d0>"
       ]
      },
      "execution_count": 2,
@@ -141,7 +141,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Add companion: ['beta Pic b', 'beta Pic c', 'HIP 65426 b', '51 Eri b', 'HR 8799 b', 'HR 8799 c', 'HR 8799 d', 'HR 8799 e', 'HD 95086 b', 'PDS 70 b', 'PDS 70 c', '2M 1207 B', 'AB Pic B', 'HD 206893 B', 'RZ Psc B', 'GQ Lup B', 'PZ Tel B', 'kappa And b', 'HD 1160 B', 'ROXs 12 B', 'ROXs 42 Bb', 'GJ 504 b', 'GJ 758 B', 'GU Psc b', '2M0103 ABb', '1RXS 1609 B', 'GSC 06214 B', 'HD 72946 B', 'HIP 64892 B', 'HD 13724 B', 'YSES 1 b', 'YSES 1 c', 'YSES 2 b', 'HD 142527 B', 'CS Cha B', 'CT Cha B', 'SR 12 C', 'DH Tau B', 'HD 4747 B', 'HR 3549 B', 'CHXR 73 B', 'HD 19467 B', 'b Cen (AB)b', 'VHS 1256 B']\n"
+      "Add companion: ['AF Lep b', 'beta Pic b', 'beta Pic c', 'HIP 65426 b', '51 Eri b', 'HR 8799 b', 'HR 8799 c', 'HR 8799 d', 'HR 8799 e', 'HD 95086 b', 'PDS 70 b', 'PDS 70 c', '2M 1207 B', 'AB Pic B', 'HD 206893 B', 'RZ Psc B', 'GQ Lup B', 'PZ Tel B', 'kappa And b', 'HD 1160 B', 'ROXs 12 B', 'ROXs 42 Bb', 'GJ 504 b', 'GJ 758 B', 'GU Psc b', '2M0103 ABb', '1RXS 1609 B', 'GSC 06214 B', 'HD 72946 B', 'HIP 64892 B', 'HD 13724 B', 'YSES 1 b', 'YSES 1 c', 'YSES 2 b', 'HD 142527 B', 'CS Cha B', 'CT Cha B', 'SR 12 C', 'DH Tau B', 'HD 4747 B', 'HR 3549 B', 'CHXR 73 B', 'HD 19467 B', 'b Cen (AB)b', 'VHS 1256 B']\n"
      ]
     },
     {
@@ -162,7 +162,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "100%|████████████████████████████████████████| 288k/288k [00:00<00:00, 160MB/s]"
+      "100%|████████████████████████████████████████| 288k/288k [00:00<00:00, 120MB/s]"
      ]
     },
     {
@@ -177,9 +177,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "\n",
-      "/Users/tomasstolker/applications/species/species/data/database.py:1420: UserWarning: Found 33 fluxes with NaN in the data of GPI_YJHK. Removing the spectral fluxes that contain a NaN.\n",
-      "  warnings.warn(\n"
+      "\n"
      ]
     },
     {
@@ -195,6 +193,8 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
+      "/Users/tomasstolker/applications/species/species/data/database.py:1421: UserWarning: Found 33 fluxes with NaN in the data of GPI_YJHK. Removing the spectral fluxes that contain a NaN.\n",
+      "  warnings.warn(\n",
       "/Users/tomasstolker/applications/species/species/data/filter_data/filter_data.py:227: UserWarning: The minimum transmission value of Subaru/CIAO.z is smaller than zero (-1.80e-03). Wavelengths with negative transmission values will be removed.\n",
       "  warnings.warn(\n"
      ]

requirements.txt

@@ -1,27 +1,27 @@
-astrodbkit2 ~= 0.5.0
-astropy ~= 6.0.0
-astroquery ~= 0.4.0
-corner ~= 2.2.0
-dynesty ~= 2.1.0
-emcee ~= 3.1.0
-h5py ~= 3.11.0
-matplotlib ~= 3.8.0
-molmass ~= 2023.8.0
-numba ~= 0.59.0
-numpy ~= 1.26.0
-pandas ~= 2.2.0
-pooch ~= 1.8.0
-PyAstronomy ~= 0.21.0
-PyMieScatt ~= 1.8.0
-pymultinest ~= 2.12.0
-requests ~= 2.32.0
-schwimmbad ~= 0.4.0 
-scipy ~= 1.13.0
-shapely ~= 2.0.0
-spectres ~= 2.2.0
-specutils ~= 1.15.0
-SQLAlchemy ~= 2.0.0
-tqdm ~= 4.66.0
-typeguard ~= 4.3.0
-ultranest ~= 4.3.0
-xlrd ~= 2.0.0
+astrodbkit2
+astropy
+astroquery
+corner
+dynesty
+emcee
+h5py
+matplotlib
+molmass
+numba
+numpy < 2.0.0
+pandas
+pooch
+PyAstronomy
+PyMieScatt
+pymultinest
+requests
+schwimmbad
+scipy
+shapely
+spectres
+specutils
+SQLAlchemy
+tqdm
+typeguard
+ultranest
+xlrd