Several improvements

tomasstolker · Feb 28, 2024 · daef13a · daef13a
1 parent 00cb0f3
commit daef13a
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Showing 3 changed files with 344 additions and 342 deletions.
diff --git a/docs/running.rst b/docs/running.rst
@@ -44,21 +44,22 @@ Below, there is an full example for reducing and calibrating the `CRIRES+ <https
 
   pipeline.rename_files()
   pipeline.extract_header()
-  pipeline.cal_dark(verbose=False)
-  pipeline.util_calib(calib_type='flat', verbose=False)
-  pipeline.util_trace(plot_trace=True, verbose=False)
-  pipeline.util_slit_curv(plot_trace=False, verbose=False)
-  pipeline.util_extract(calib_type='flat', verbose=False)
-  pipeline.util_normflat(verbose=False)
-  pipeline.util_calib(calib_type='une', verbose=False)
-  pipeline.util_extract(calib_type='une', verbose=False)
-  pipeline.util_genlines(verbose=False)
-  pipeline.util_wave(calib_type='une', poly_deg=0, wl_err=0.1, verbose=False)
-  pipeline.util_wave(calib_type='une', poly_deg=2, wl_err=0.03, verbose=False)
-  pipeline.util_calib(calib_type='fpet', verbose=False)
-  pipeline.util_extract(calib_type='fpet', verbose=False)
-  pipeline.util_wave(calib_type='fpet', poly_deg=4, wl_err=0.01, verbose=False)
-  pipeline.obs_nodding(verbose=False, correct_bad_pixels=True, extraction_required=True, check_existing=False)
+  pipeline.cal_dark(verbose=False, create_sof=True)
+  pipeline.util_calib(calib_type='flat', verbose=False, create_sof=True)
+  pipeline.util_trace(plot_trace=True, verbose=False, create_sof=True)
+  pipeline.util_slit_curv(plot_trace=False, verbose=False, create_sof=True)
+  pipeline.util_extract(calib_type='flat', verbose=False, create_sof=True)
+  pipeline.util_normflat(verbose=False, create_sof=True)
+  pipeline.util_bpm_merge(verbose=False, create_sof=True)
+  pipeline.util_calib(calib_type='une', verbose=False, create_sof=True)
+  pipeline.util_extract(calib_type='une', verbose=False, create_sof=True)
+  pipeline.util_genlines(verbose=False, create_sof=True)
+  pipeline.util_wave(calib_type='une', poly_deg=0, wl_err=0.1, verbose=False, create_sof=True)
+  pipeline.util_wave(calib_type='une', poly_deg=2, wl_err=0.03, verbose=False, create_sof=True)
+  pipeline.util_calib(calib_type='fpet', verbose=False, create_sof=True)
+  pipeline.util_extract(calib_type='fpet', verbose=False, create_sof=True)
+  pipeline.util_wave(calib_type='fpet', poly_deg=4, wl_err=0.01, verbose=False, create_sof=True)
+  pipeline.obs_nodding(correct_bad_pixels=True, extraction_required=True, check_existing=False, verbose=False, create_sof=True)
   pipeline.run_skycalc(pwv=1.)
   pipeline.plot_spectra(nod_ab='A', telluric=True, corrected=False, file_id=0)