-
Notifications
You must be signed in to change notification settings - Fork 0
STATO OWL to FHIR CodeSystem mappings
Harold Solbrig edited this page Sep 26, 2019
·
1 revision
| predicate | FHIR Target | example | CTS2 Target | Notes |
|---|---|---|---|---|
| dc:contributor | (No fit) | "Chris Mungall (http://orcid.org/0000-0002-6601-2165)" |
CodeSystem.publisher is singular, contributor is multiple |
|
| dc:creator | (No fit) | "Alejandra Gonzalez-Beltran (http://orcid.org/0000-0003-3499-8262)" | " | |
| dc:description | description | “STATO is the statistical…” | Issue: multi-lingual descriptions are not addressed in FHIR | |
| dc:rights | copyright | “This ontology is distributed under..." | There is an error in the DCT type — says ^^xsd:anyURI | |
| dc:subject | purpose | "Statistical Method, Design of Experiment, P..." | multi-lingual not supported | |
| dc:title | title | "STATO: the statistical methods ontology" | ||
| terms:license | (no fit) | "http://creativecommons.org/licenses/by/3.0/"^^xsd:anyURI | Issue: Significant gap in FHIR spec | |
| doap:bug-database | (No fit) | "https://github.com/ISA-tools/stato/issues" | ||
| doap:homepage | (no fit) | "http://stato-ontology.org/" | ||
| doap:mailing-list | (no fit) | "[email protected]" | ||
| owl:versionInfo | version | "RC1.4" | ||
| Subject of rdfs:type owl:Ontology | uri | |||
| NONE | identifier | |||
| "STATO" | name | We need to determine where to get this | ||
| "active" | status | |||
| NONE | experimental | |||
| date | (no idea where to get this) "The date (and optionally time) when the code system was published. The date must change when the business version changes and it must change if the status code changes. In addition, it should change when the substantive content of the code system changes." | |||
| publisher | *Where do we find this? BioPortal? | |||
| contact | This is an attribute of the publisher field, just not correctly structured in FHIR | |||
| NONE | useContext | |||
| NONE | jurisdiction | |||
| NONE | caseSensitive | |||
| valueSet | To be determined. Note that this is the official URI, not the FHIR URL | |||
| "is-a" | hierarchicalMeaning | Pretty much always the same for OWL | ||
| true | compositional | Assuming that OWL counts as a compositional grammar | ||
| false | versionNeeded | We assume that all OWL ontologies are well-behaved | ||
| "complete" or "not-present" | content | "complete" if count < TBD else "non-present" | ||
| NONE | supplements | |||
| len([c where not c.IAO_0000412]) | count | Do we really have to check for imported from self? Probably not |