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Enhancers_and_TFBS_Presence

Looking at how all insect TFBS from the JASPAR database correlate with enhancer function in Drosophila

alignments

  • I got these aligned sequences from a research project headed by Ciera Martinez. She got the raw sequences from a paper (Khan et. al.) and she did some processing and QC on them.

insect_pfms

  • I downloaded these from the JASPAR database. I used all the TFBS JASPAR PFMs from the insect database

Thomas_Lane_MCB288

  • This is the notebook where I run my experiment.

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Looking at how all insect TFBS from the JASPAR database correlate with enhancer function in Drosophila

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