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Split stream and process mutations with streaming JSON parsing #619

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merged 8 commits into from
Oct 8, 2024

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@theosanderson theosanderson commented Oct 8, 2024

Resolves #613

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@theosanderson theosanderson mentioned this pull request Oct 8, 2024
@theosanderson theosanderson changed the title split-stream Split stream and process mutations with streaming JSON parsing Oct 8, 2024
@theosanderson theosanderson merged commit 88d5a55 into master Oct 8, 2024
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@theosanderson theosanderson deleted the split-stream branch October 8, 2024 23:21
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4Mb genome, many mutations: first line of .jsonl.gz becomes prohibitively long with amino acid changes
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