Merge pull request #154 from theislab/development

update docs and python versions

Author: AnnaChristina

.cookietemple.yml

@@ -15,5 +15,5 @@ full_name: Anna Schaar
 email: [email protected]
 project_name: ncem
 project_short_description: ncem.  Learning cell communication from spatial graphs of cells.
-version: 0.1.4
+version: 0.1.5
 license: BSD-3-Clause

.github/release-drafter.yml

@@ -1,5 +1,5 @@
-name-template: "0.1.4 🌈" # <<COOKIETEMPLE_FORCE_BUMP>>
-tag-template: 0.1.4 # <<COOKIETEMPLE_FORCE_BUMP>>
+name-template: "0.1.5 🌈" # <<COOKIETEMPLE_FORCE_BUMP>>
+tag-template: 0.1.5 # <<COOKIETEMPLE_FORCE_BUMP>>
 categories:
     - title: "🚀 Features"
       labels:

.github/workflows/build_package.yml

@@ -9,14 +9,14 @@ jobs:
         strategy:
             matrix:
                 os: [macos-latest, ubuntu-latest, windows-latest]
-                python: [3.7, 3.8]
+                python: [3.8]
 
         steps:
             - uses: actions/checkout@v2
               name: Check out source-code repository
 
             - name: Setup Python
-              uses: actions/setup-python@v2
+              uses: actions/setup-python@v4.3.0
               with:
                   python-version: ${{ matrix.python }}
 

.github/workflows/main_master_branch_protection.yml

@@ -40,7 +40,7 @@ jobs:
         runs-on: ubuntu-latest
         steps:
             - name: Set up Python
-              uses: actions/setup-python@v2
+              uses: actions/setup-python@v4.3.0
               with:
                   python-version: "3.8"
             # PRs to the repository master branch are only ok if coming from any patch or release branch

.github/workflows/publish_docs.yml

@@ -11,7 +11,7 @@ jobs:
               name: Check out source-code repository
 
             - name: Setup Python
-              uses: actions/setup-python@v1
+              uses: actions/setup-python@v4.3.0
               with:
                   python-version: 3.8
 

.github/workflows/publish_package.yml

@@ -15,7 +15,7 @@ jobs:
                   fetch-depth: 2
 
             - name: Set up Python
-              uses: actions/setup-python@v2.1.4
+              uses: actions/setup-python@v4.3.0
               with:
                   python-version: "3.8"
 
@@ -31,7 +31,7 @@ jobs:
             - name: Publish package on PyPI
               uses: pypa/[email protected]
               with:
-                  # TODO COOKIETEMPLE: Configure your PyPI Token to enable automatic deployment to PyPi on releases
+                  # COOKIETEMPLE: Configure your PyPI Token to enable automatic deployment to PyPi on releases
                   # https://help.github.com/en/actions/configuring-and-managing-workflows/creating-and-storing-encrypted-secrets
                   user: __token__
                   password: ${{ secrets.PYPI_TOKEN }}

.github/workflows/run_cookietemple_lint.yml

@@ -11,7 +11,7 @@ jobs:
               name: Check out source-code repository
 
             - name: Setup Python
-              uses: actions/setup-python@v1
+              uses: actions/setup-python@v4.3.0
               with:
                   python-version: 3.8
 

.github/workflows/run_tests.yml

@@ -66,7 +66,7 @@ jobs:
               uses: actions/[email protected]
 
             - name: Set up Python ${{ matrix.python-version }}
-              uses: actions/setup-python@v2.1.4
+              uses: actions/setup-python@v4.3.0
               with:
                   python-version: ${{ matrix.python-version }}
 
@@ -99,7 +99,7 @@ jobs:
                   print("::set-output name=result::{}".format(result))
 
             - name: Restore pre-commit cache
-              uses: actions/cache@v2.1.6
+              uses: actions/cache@v3.3.1
               if: matrix.session == 'pre-commit'
               with:
                   path: ~/.cache/pre-commit
@@ -113,14 +113,14 @@ jobs:
 
             - name: Upload coverage data
               if: always() && matrix.session == 'tests'
-              uses: "actions/upload-artifact@v2.2.4"
+              uses: "actions/upload-artifact@v3.1.2"
               with:
                   name: coverage-data
                   path: ".coverage.*"
 
             - name: Upload documentation
               if: matrix.session == 'docs-build'
-              uses: actions/upload-artifact@v2.2.4
+              uses: actions/upload-artifact@v3.1.2
               with:
                   name: docs
                   path: docs/_build
@@ -133,7 +133,7 @@ jobs:
               uses: actions/[email protected]
 
             - name: Set up Python 3.8
-              uses: actions/setup-python@v2.1.4
+              uses: actions/setup-python@v4.3.0
               with:
                   python-version: 3.8
 

.github/workflows/sync_project.yml

@@ -10,7 +10,7 @@ jobs:
         runs-on: ubuntu-latest
         steps:
             - name: Setup Python
-              uses: actions/setup-python@v1
+              uses: actions/setup-python@v4.3.0
               with:
                   python-version: 3.8
 

.pre-commit-config.yaml

@@ -44,7 +44,7 @@ repos:
       hooks:
           - id: prettier
     - repo: https://github.com/pycqa/isort
-      rev: 5.9.3
+      rev: 5.11.5
       hooks:
           - id: isort
             name: isort (python)