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I am following the steps in the tutorial and I was able to get an output for the kBET() function on my dataset. I'm running into some issues in the subsequent functions:
batch.silhouette <- batch_sil(pca.data, meta$sample_id)
Error in silhouette.default(as.numeric(batch), dd) :
clustering 'x' and dissimilarity 'dist' are incompatible
I'm using the same data and batch variables I used in the kBET() function. Any thoughts of what might be going wrong and how I can fix this ? Thanks a lot.
The text was updated successfully, but these errors were encountered:
Hello,
I am following the steps in the tutorial and I was able to get an output for the kBET() function on my dataset. I'm running into some issues in the subsequent functions:
I'm using the same data and batch variables I used in the kBET() function. Any thoughts of what might be going wrong and how I can fix this ? Thanks a lot.
The text was updated successfully, but these errors were encountered: