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Hello, thank you for sharing the code for your model.
I noticed that in calculating differential expression, the model calls sc.tl.rank_genes_groups with the default method in helper.py. It seems the default method would be using t-test.
One of the methods compared in the paper, scGen, also calls sc.tl.rank_genes_groups but specifying the method to be wilcoxon.
I was wondering could you say more about the differences? Thanks,
The text was updated successfully, but these errors were encountered:
Hello, thank you for sharing the code for your model.
I noticed that in calculating differential expression, the model calls
sc.tl.rank_genes_groups
with the default method in helper.py. It seems the default method would be using t-test.One of the methods compared in the paper, scGen, also calls
sc.tl.rank_genes_groups
but specifying the method to be wilcoxon.I was wondering could you say more about the differences? Thanks,
The text was updated successfully, but these errors were encountered: