chore: trigger release process#1

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github-actions[bot] wants to merge 364 commits intomainfrom dev

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Commits on May 17, 2024

Commits on May 20, 2024

fix(spark helpers): sorter function updated to avoid crash (opentargets#613 )
DSuveges
authored

Commits on May 22, 2024

feat: fine-mapping simulations class (opentargets#618 )

addramir
and
Daniel-Considine
authored

Commits on May 28, 2024

feat(config): gnomAD steps configuration extraction and versioning (opentargets#620 )

project-defiant
and
Szymon Szyszkowski
authored
fix(docs): update roadmap.md (opentargets#622 )

buniello
and
addramir
authored

Commits on May 30, 2024

Commits on May 31, 2024

fix(docs): fixed typo in l2g_prediciton schema page (opentargets#629 )

project-defiant
and
Szymon Szyszkowski
authored

Commits on Jun 4, 2024

feat(config): extract gwas_significance parameter to step configuration (opentargets#628 )

authored

Commits on Jun 7, 2024

Commits on Jun 10, 2024

build(deps-dev): bump ipython from 8.24.0 to 8.25.0 (opentargets#636 )
dependabot[bot]
authored

Commits on Jun 13, 2024

build(deps-dev): bump dbldatagen from 0.3.5 to 0.4.0 (opentargets#637 )
dependabot[bot]
authored
feat(config): 24.06 data release fixes (opentargets#639 )

project-defiant
and
Szymon Szyszkowski
authored

Commits on Jun 14, 2024

fix(L2GPrediction): schema validation (opentargets#642 )

project-defiant
and
Szymon Szyszkowski
authored

Commits on Jun 17, 2024

Commits on Jun 19, 2024

feat(stydyLocus): adding new locus collection using boundaries (opentargets#644 )

authored

Commits on Jun 24, 2024

Commits on Jun 25, 2024

Commits on Jun 28, 2024

Commits on Jun 30, 2024

feat(datasets): adding new variant index model (opentargets#641 )

DSuveges
and
pre-commit-ci[bot]
authored

Commits on Jul 4, 2024

feat: vep annotation (dockerised + google batch + airflow) (opentargets#608 )

authored

Commits on Jul 8, 2024

feat: locus_breaker_clumping (opentargets#655 )

Daniel-Considine
and
addramir
authored

Commits on Jul 11, 2024

Commits on Jul 12, 2024

build(deps-dev): bump ipython from 8.25.0 to 8.26.0 (opentargets#662 )

dependabot[bot]
and
d0choa
authored
ci: prevent user from rebasing in minimal way (opentargets#691 )

project-defiant
and
Szymon Szyszkowski
authored
feat: artifacts versionned by release (opentargets#692 )

project-defiant
and
Szymon Szyszkowski
authored
fix: moving hl.init (opentargets#687 )
Daniel-Considine
authored
chore(study_index): improve study definition for the eQTL Catalogue and Finngen (opentargets#693 )
ireneisdoomed
authored
feat(studyLocus validation): adding validation logic to studyLocus dataset (opentargets#686 )

DSuveges
and
d0choa
authored
ci: revert semantic-release update (opentargets#694 )

project-defiant
and
Szymon Szyszkowski
authored
feat: full orchestration of the variant index dag (opentargets#678 )

ireneisdoomed
and
DSuveges
authored

Commits on Jul 15, 2024

Commits on Jul 16, 2024

Commits on Jul 17, 2024

feat: implement reading study locus paths from the manifest (opentargets#706 )
tskir
authored

Commits on Jul 19, 2024

ci(release): use github app token for tag push (opentargets#709 )
project-defiant
authored

Commits on Jul 25, 2024

feat: expose summary statistics qc and locus breaker steps to hydra cli (opentargets#716 )

project-defiant
and
Szymon Szyszkowski
authored

Commits on Jul 29, 2024

fix: change config params to match new name (opentargets#721 )

project-defiant
and
Szymon Szyszkowski
authored

Commits on Jul 30, 2024

chore: pre-commit autoupdate (opentargets#715 )
pre-commit-ci[bot]
authored

Commits on Jul 31, 2024

build(deps-dev): bump pymdown-extensions from 10.8.1 to 10.9 (opentargets#720 )

dependabot[bot]
and
project-defiant
authored

Commits on Aug 15, 2024

docs: macos fix for some functions (opentargets#729 )
Daniel-Considine
authored

Commits on Aug 22, 2024

Commits on Aug 23, 2024

Commits on Aug 27, 2024

feat(variant_index): changes for a successful run (opentargets#735 )

authored

Commits on Aug 28, 2024

fix: update cluster creation command (opentargets#739 )

project-defiant
and
Szymon Szyszkowski
authored
fix: revert recursiveFileLookup to False (opentargets#738 )

project-defiant
and
Szymon Szyszkowski
authored

Commits on Aug 29, 2024

feat: Finngen r11 ingestion (opentargets#733 )

authored

Commits on Aug 30, 2024

fix: using h4 instead of log2(h4/h3) (opentargets#740 )
Daniel-Considine
authored

Commits on Sep 4, 2024

fix(finngen_r11): preserve all studyIds (opentargets#747 )

authored

Commits on Sep 9, 2024

Commits on Sep 10, 2024

build(deps-dev): bump deptry from 0.19.1 to 0.20.0 (opentargets#742 )

dependabot[bot]
and
project-defiant
authored
fix: validation name mapping (opentargets#753 )

project-defiant
and
Szymon Szyszkowski
authored

Commits on Sep 12, 2024

feat(validation): adding credible set variant validation (opentargets#757 )
DSuveges
authored
feat: drop airflow orchestration layer from gentropy (opentargets#758 )

project-defiant
and
Szymon Szyszkowski
authored

Commits on Sep 13, 2024

Commits on Sep 17, 2024

Commits on Sep 19, 2024

perf: quickly build a Docker image for every branch (opentargets#773 )
tskir
authored

Commits on Sep 24, 2024

Commits on Sep 25, 2024

fix: clean unused study_locus step parameter (opentargets#786 )
d0choa
authored

Commits on Sep 26, 2024

Commits on Sep 27, 2024

fix(safe_array_union): allow for sorting nested structs (opentargets#793 )

project-defiant
and
Szymon Szyszkowski
authored
fix: fix bag in neglog_pvalue_to_mantissa_and_exponent (opentargets#795 )
addramir
authored

Commits on Oct 1, 2024

Commits on Oct 2, 2024

Commits on Oct 7, 2024

fix: biosample id duplication (opentargets#822 )
Tobi1kenobi
authored

Commits on Oct 8, 2024

Commits on Oct 10, 2024

Commits on Oct 12, 2024

feat: enhance variant index partitioning (opentargets#834 )
d0choa
authored

Commits on Oct 14, 2024

Commits on Oct 16, 2024

fix: updating the susie_finemapper init (opentargets#846 )

Daniel-Considine
and
addramir
authored

Commits on Oct 21, 2024

Commits on Oct 23, 2024

Commits on Oct 26, 2024

feat: flagging duplicated entries while keeping one of the duplicates (opentargets#876 )

DSuveges
and
addramir
authored