Welcome to the proteomics session of this workshop! We will mainly work with Python and Google Colab to analyze proteomics data. As we have grouped participant randomly into groups, please try to find your group members before starting this session.
| Hour | Activity | TA |
|---|---|---|
| 1300-1330 | Introduction to Proteomics | TS |
| 1330-1430 | Hands-on HPA and MS data | TS |
| 1430-1530 | Swedish Fika | TS |
| 1530-1600 | Groupwork presentation | TS |
We will work mainly with python within Google Colab. You can access the lab with the steps below.
- Dowload analysis file (
.ipynb) to your local computer. - Open Google Colab on the web browser. One can log in with any account.
- Upload the file to Google Colab in
Upload. One can just drag the notebook file. - Upload the input files to Google Colab if neccessary.
- Follow the instruction within the notebook. Enjoy!
| Group | Tissue |
|---|---|
| 1 | Blood |
| 2 | Bone |
| 3 | Brain |
| 4 | Breast |
| 5 | Esophagus |
| 6 | Haematopoietic and Lymphoid |
| 7 | Kidney |
| 8 | Lung |
| 9 | Ovary |
| 10 | Skin |