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remove betydb_record and single record functions #8

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remove betydb_record and single record functions #8

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59 changes: 0 additions & 59 deletions R/betydb.R
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Original file line number Diff line number Diff line change
Expand Up @@ -312,50 +312,6 @@ betydb_http <- function(url, args = list(), key = NULL, user = NULL, pwd = NULL,
return(ans)
}

#################### by ID

#' Get details about a single item from a table
#' @export
#' @rdname betydb
#' @param table (character) Name of the database table with which this ID is associated.
betydb_record <- function(id, table, api_version = NULL, betyurl = NULL, fmt = NULL, key = NULL, user = NULL, pwd = NULL, ...){
args = list(...)
betydb_GET(makeurl(table, id, fmt, api_version, betyurl), args, which = makepropname(table, api_version))
}

#' @export
#' @rdname betydb
betydb_trait <- function(id, genus = NULL, species = NULL, api_version = NULL, betyurl = NULL, fmt = "json", key = NULL, user = NULL, pwd = NULL, ...){
args <- traitsc(list(species.genus = genus, species.species = species))
betydb_GET(makeurl("variables", id, fmt, api_version, betyurl), args, key, user, pwd, "variable", ...)
}

#' @export
#' @rdname betydb
betydb_specie <- function(id, genus = NULL, species = NULL, api_version = NULL, betyurl = NULL, fmt = "json", key = NULL, user = NULL, pwd = NULL, ...){
args <- traitsc(list(genus = genus, species = species))
betydb_GET(makeurl("species", id, fmt, api_version, betyurl), args, key, user, pwd, "specie", ...)
}

#' @export
#' @rdname betydb
betydb_citation <- function(id, genus = NULL, species = NULL, api_version = NULL, betyurl = NULL, fmt = "json", key = NULL, user = NULL, pwd = NULL, ...){
args <- traitsc(list(genus = genus, species = species))
betydb_GET(makeurl("citations", id, fmt, api_version, betyurl), args, key, user, pwd, "citation", ...)
}

#' @export
#' @rdname betydb
betydb_site <- function(id, api_version = NULL, betyurl = NULL, fmt = "json", key = NULL, user = NULL, pwd = NULL, ...){
betydb_GET(makeurl("sites", id, fmt, api_version, betyurl), args = NULL, key, user, pwd, "site", ...)
}

#' @export
#' @rdname betydb
betydb_experiment <- function(id, api_version = NULL, betyurl = NULL, fmt = "json", key = NULL, user = NULL, pwd = NULL, ...){
betydb_GET(makeurl("experiments", id, fmt, api_version, betyurl), args = NULL, key, user, pwd, "experiment", ...)
}

betydb_auth <- function(user,pwd,key){
if (is.null(key) && is.null(user)) {
key <- getOption("betydb_key", NULL)
Expand All @@ -379,18 +335,3 @@ betydb_auth <- function(user,pwd,key){
}

warn <- "Supply either api key, or user name/password combo"


# functions that dont work ------------------------------
## betydb_traits
# betydb_traits <- function(genus = NULL, species = NULL, trait = NULL, author = NULL, fmt = "json", key = NULL, user = NULL, pwd = NULL, ...){
# args <- traitsc(list(species.genus = genus, species.species = species, variables.name = trait))
# url <- makeurl("traits", fmt)
# betydb_GET(url = url, args, key, user, pwd, "trait", ...)
# }

## betydb_yield
# betydb_yield <- function(id, genus = NULL, species = NULL, fmt = "json", key = NULL, user = NULL, pwd = NULL, ...){
# args <- traitsc(list(genus = genus, species = species))
# betydb_GET2(makeurl("yields", id, fmt), args, key, user, pwd, "yield", ...)
# }