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OnSIDES v3.0.0
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@zietzm zietzm released this 24 Apr 23:38
v3.0.0
550aed8

Updated April 2025.

Major overhaul of the OnSIDES codebase. Updates include:

  • Unified processing for all English labels
  • New database schema
  • Reproducible database generation (Snakemake)
  • Schemas + loading scripts for common databases
  • Include manual annotations in the release file
  • Produce a high confidence set (adverse effects labeled in all sources)

The data ZIP file (onsides-v3.0.0.zip) has the following layout:

├── annotations   # Manual annotations
├── csv  # Main data tables
├── database_scripts  # Bash scripts for loading tables into a database
└── schema   # Database schema files for MySQL, Postgres, and SQLite

Direct questions to @ntatonetti or @zietzm

Contributors

ntatonetti and zietzm
Assets 3
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