Skip to content

v0.8.12
Compare
Choose a tag to compare
@tanghaibao tanghaibao released this 06 Dec 05:44
· 32 commits to main since this release
v0.8.12
84f89f7

Changelog

84f89f7 [README] Edit README to include pipeline instructions; version v0.8.12
04531ca [notebooks] Add HiC-linksize-empirical-distribution
bf822fb [extract] Fix crashes when link size exceeds MaxLinkDist
a301323 [partition] Fix issue #1, use --minREs strictly as user input
d9eb5b7 [extract] Extract first part of the sequence name
f0a075e [evaluate] Update MaxHalford/gago => MaxHalford/eaopt
f2f9392 [README] Add partition cmd on pruned output
8185b0a [partition] Add partitionFlags
4d7935d [cluster] Make passRatio a bit more stringent
a0cf7d3 [partition] Change default MinREs
bdc30e7 [prune] Summary statistics of pruned links
831f901 [prune] Update score in prune
dba743f [prune] Replace *AlleleGroup with groupID
7d66dbe [prune] Add pruneCrossAllelic()
1d9e0ce [prune] Add writePairsFile()
c36c4f4 [extract] Add label column to pairs.txt
c42f43a [prune] Add parseAllelesTable()
d660177 [prune] Add prune.v2.cpp
afd492a [evaluate] Revert back to EvaluateSumRecip() as default Evaluate()
8ed9616 [cluster] Update N => nNonSkipped
ddf6835 [partition] Add 1 pseudocount to RE counts; Also lower the MinRE cutoff
51110c2 [release] Add packr to goreleaser

Assets 6
Loading