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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 465 104

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 16 10

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 18 1

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 11

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 7 1

Repositories

Showing 10 of 55 repositories
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn’s past year of commit activity
    Python 6 GPL-3.0 0 15 3 Updated Apr 4, 2025
  • standard-trait-analysis Public

    Data cleanup, exploratory data analysis, and dimensionality reduction of standard phenotypic traits with metadata output from Bloom and sleap-roots-pipeline.

    talmolab/standard-trait-analysis’s past year of commit activity
    Python 0 BSD-2-Clause 0 0 1 Updated Apr 4, 2025
  • sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    talmolab/sleap-roots’s past year of commit activity
    Python 11 BSD-3-Clause 0 10 4 Updated Apr 4, 2025
  • lablink Public
    talmolab/lablink’s past year of commit activity
    Shell 0 BSD-2-Clause 0 23 2 Updated Apr 3, 2025
  • webRTC-connect Public
    talmolab/webRTC-connect’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Apr 3, 2025
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    talmolab/sleap’s past year of commit activity
    Python 465 104 63 (4 issues need help) 31 Updated Apr 3, 2025
  • sleap-mot Public

    Standalone multi-object tracking.

    talmolab/sleap-mot’s past year of commit activity
    Python 0 BSD-3-Clause 0 7 0 Updated Apr 3, 2025
  • dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    talmolab/dreem’s past year of commit activity
    Python 7 BSD-3-Clause 1 10 8 Updated Apr 2, 2025
  • sleap-roots-pipeline Public

    Container orchestration for sleap-roots inference pipeline.

    talmolab/sleap-roots-pipeline’s past year of commit activity
    Shell 0 BSD-2-Clause 0 0 0 Updated Mar 27, 2025
  • lab-website Public

    Website for Talmo Pereira's lab (https://talmolab.org)

    talmolab/lab-website’s past year of commit activity
    SCSS 1 BSD-3-Clause 0 0 0 Updated Mar 27, 2025
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