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Bioinformatics of Chaoboridae (Eucorethra, Mochlonyx, Chaoborus). RNA-seq, DESeq, RACE. Unix (bash) & R

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chaoboridae

Bioinformatics of Chaoboridae (Eucorethra, Mochlonyx, Chaoborus)

Trinity de novo assembly of 3 tissues in Chaoborus trivittatus, Mochlonyx cinctipes, and Eucorethra underwoodi

Functional annotation of de novo assemblies using Trinotate

Transcription (in TPM) of identified genes for each sample using Salmon

Differential tissue expression analysis using DEseq and related packages in R; ortholog identification and enrichment analysis in R; data wrangling and misc data visualizations in R

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Bioinformatics of Chaoboridae (Eucorethra, Mochlonyx, Chaoborus). RNA-seq, DESeq, RACE. Unix (bash) & R

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