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VCF2EDS

Dependencies

  • vcflib and hts
    • included in build process
  • libz
  • liblzma
  • libbz2
  • libcurl
  • libm
    • should be already installed on your system

Build

> make vcf2eds

Run

> ./bin/vcf2eds -r ./data/input/Homo_sapiens.GRCh38.dna.chromosome.22.fa.gz -v ./data/input/ALL.chr22.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz -o ./data/output/output.eds

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Tool for converting reference sequence and VCF files to single Elastic Degenerate String

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