Update docker images to reduce security vulnerabilities

docker/estimate/Dockerfile

@@ -1,3 +1,3 @@
-FROM r-base:4.0.3
+FROM ghcr.io/r-hub/r-minimal/r-minimal:4.4.2
 
 RUN R -e 'install.packages("estimate", repos="http://r-forge.r-project.org", dependencies=TRUE)'

docker/estimate/package.json

@@ -1,4 +1,4 @@
 {
     "name": "estimate",
-    "version": "1.1.1"
+    "version": "1.1.2"
 }

docker/python-plotting/Dockerfile

@@ -1,4 +1,4 @@
-FROM python:3.13.0
+FROM python:3.13.1-alpine
 
 RUN pip install pandas numpy matplotlib seaborn plotly
 

docker/python-plotting/package.json

@@ -1,4 +1,4 @@
 {
     "name": "python-plotting",
-    "version": "1.2.1"
+    "version": "1.2.2"
 }

docker/umap/Dockerfile

@@ -1,4 +1,9 @@
-FROM python:3.12.7
+FROM python:3.13.1-alpine
+
+# Downstream requires llvm15, but that is out-of-date
+# llvm15 installs with the -15 suffix, so we need to symlink
+RUN apk add build-base llvm15-dev \
+    && ln -s /usr/bin/llvm-config-15 /usr/bin/llvm-config
 
 RUN pip install umap-learn==0.5.7 pandas
 

docker/umap/package.json

@@ -1,5 +1,5 @@
 {
     "name": "umap",
     "version": "0.5.7",
-    "revision": "3"
+    "revision": "4"
 }