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durbinlib.jar The idea is simple. This is the Kitchen Sink. Whenever I develop some highly useful utility class, I'll put in here so that I can just grab durbinlib.jar and have all my Favorites in one fell swoop. It's called durbinlib because I expect that my own personal usage cases will be the only real commonality. I don't want to have to think about it, I just want to write the java code and forget about it. Mainly this is for Groovy. Groovy is great, but there are some things that I need to do frequently that I need to do either more cleanly or with faster code than I can in Groovy. For example, consider the Perl tr() functionality. That's handy for a DNA guy who frequently needs to change characters in a string from one set into those in another set. Groovy-only versions of this I have written are too slow by a factor of 10. Doing "ant install" here will copy durbinlib.jar into ~/.groovy/lib where it will immediately be available to any Groovy scripts. 03/06/08 ======================== NOTE: The current install script needs Ant 1.7 or later. Ant 1.6.5 in particular will not work correctly with this build.xml.
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Kitchen sink of Java/Groovy classes for UCSC cancer genomics.
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