Fix check errors

DESCRIPTION

@@ -37,7 +37,8 @@ Imports:
     RColorBrewer,
     stringr,
     shiny,
-    plotly
+    plotly,
+    ggplot2
 RdMacros: lifecycle
 Suggests: 
     testthat,

R/functions_OLD.R

@@ -210,7 +210,7 @@ pretty_plot = function(.data,
 #'
 #' @return A tibble with additional columns
 #'
-gate_interactive_old <-
+gate_interactive <-
   function(.data,
            .element,
            .dim1,

R/gate_app.R

@@ -1,5 +1,5 @@
 #' Create Shiny App UI
-#' @noRd
+#' 
 #' @importFrom shiny fluidPage
 #' @importFrom shiny actionButton
 #' @importFrom plotly plotlyOutput
@@ -13,7 +13,7 @@ ui <-
   )
 
 #' Run Shiny App for interactive gating 
-#' @noRd
+#' 
 #' @importFrom plotly renderPlotly
 #' @importFrom plotly event_data
 #' @importFrom plotly ggplotly
@@ -24,6 +24,9 @@ ui <-
 #' @importFrom purrr map_lgl
 #' @importFrom shiny observe
 #' @importFrom shiny stopApp
+#' @param input Server input parameter
+#' @param output Server output parameter
+#' @param session Server session parameter
 #' @return NA
 #' @export
 server <- 

R/methods.R

@@ -199,7 +199,7 @@ gate_int.numeric = 	function(  .dim1,
 #' points. A record of the selected points is stored in `tidygate_env$select_data` and a record of 
 #' the gates is stored in `tidygate_env$brush_data`.
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' library(dplyr)
 #' library(ggplot2)
 #' 
@@ -253,7 +253,7 @@ gate_simple <-
 #' points. A record of the selected points is stored in `tidygate_env$select_data` and a 
 #' record of the gates is stored in `tidygate_env$brush_data`.
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' library(dplyr)
 #' library(ggplot2)
 #' 
@@ -266,7 +266,7 @@ gate_simple <-
 #'   theme_dark()
 #'   
 #' mtcars |>
-#'   mutate(selected = gate_interactive(dimension_x = mpg, dimension_y = wt, custom_plot = scaled_plot)) |>
+#'   mutate(selected = gate_custom(custom_plot = scaled_plot)) |>
 #'   print()
 #' }
 #' @export

vignettes/introdution.Rmd

@@ -1,6 +1,6 @@
 ---
 title: "tidygate: high-level data analysis and manipulation in tidyverse style"
-output: github_documentdate: "`r Sys.Date()`"
+date: "`r Sys.Date()`"
 package: tidygate
 output:
   BiocStyle::html_document: