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Improve documentation and package imports #308

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Improve documentation and package imports #308

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Commits on Sep 16, 2023

  1. resolve tidyomics conflicts and docs clean up

    @chilampoon
    chilampoon committed Sep 16, 2023
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Commits on Sep 17, 2023

  1. rm ggplot2 dep and add .Rinstignore

    @chilampoon
    chilampoon committed Sep 17, 2023
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  2. Merge remote-tracking branch 'upstream/master'

    @chilampoon
    chilampoon committed Sep 17, 2023
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  3. try to find the warning source

    @chilampoon
    chilampoon committed Sep 17, 2023
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Commits on Sep 19, 2023

  1. update R ver and check-bioc

    @chilampoon
    chilampoon committed Sep 19, 2023
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  2. imports conflict

    @chilampoon
    chilampoon committed Sep 19, 2023
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  3. set _R_CHECK_FORCE_SUGGESTS_ to false

    @chilampoon
    chilampoon committed Sep 19, 2023
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  4. add pkgconfig

    @chilampoon
    chilampoon committed Sep 19, 2023
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  5. Merge branch 'master' into master

    @stemangiola
    stemangiola authored Sep 19, 2023
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Commits on Dec 13, 2023

  1. add method

    @stemangiola
    stemangiola committed Dec 13, 2023
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Commits on Jan 4, 2024

  1. Set automatic Bioconductor and R build-check versions

    @william-hutchison
    william-hutchison committed Jan 4, 2024
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  2. Replace check-bioc with rworkflows workflow file

    @william-hutchison
    william-hutchison committed Jan 4, 2024
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  3. Update workflow branch triggers

    @william-hutchison
    william-hutchison committed Jan 4, 2024
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Commits on Jan 5, 2024

  1. Update function imports

    @william-hutchison
    william-hutchison committed Jan 5, 2024
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  2. Update EPIC and EGSEA function imports

    @william-hutchison
    william-hutchison committed Jan 5, 2024
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Commits on Jan 8, 2024

  1. Fix vignette error

    @william-hutchison
    william-hutchison committed Jan 8, 2024
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  2. Remove unneeded files

    @william-hutchison
    william-hutchison committed Jan 8, 2024
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  3. Update suggested packages

    @william-hutchison
    william-hutchison committed Jan 8, 2024
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  4. Replace README example data

    @william-hutchison
    william-hutchison committed Jan 8, 2024
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  5. Update README tidyomics ecosystem links

    @william-hutchison
    william-hutchison committed Jan 8, 2024
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  6. Version up

    @william-hutchison
    william-hutchison committed Jan 8, 2024
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  7. Remove EGSEA import

    @william-hutchison
    william-hutchison committed Jan 8, 2024
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  8. Version up

    @william-hutchison
    william-hutchison committed Jan 8, 2024
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Commits on Jan 9, 2024

  1. Remove unneeded whole package imports

    @william-hutchison
    william-hutchison committed Jan 9, 2024
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  2. Remove unneeded whole dplyr import

    @william-hutchison
    william-hutchison committed Jan 9, 2024
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  3. Replace EPIC import with message

    @william-hutchison
    william-hutchison committed Jan 9, 2024
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  4. Version up

    @william-hutchison
    william-hutchison committed Jan 9, 2024
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  5. Update README

    @william-hutchison
    william-hutchison committed Jan 9, 2024
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  6. Version up

    @william-hutchison
    william-hutchison committed Jan 9, 2024
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  7. Merge branch 'master' into chilampoon-improve-documentation

    @stemangiola
    stemangiola authored Jan 9, 2024
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Commits on Feb 7, 2024

  1. Merge branch 'master' into chilampoon-improve-documentation

    @stemangiola
    stemangiola authored Feb 7, 2024
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Commits on Feb 12, 2024

  1. Merge remote-tracking branch 'stemangiola/master' into chilampoon-imp… 

    …rove-documentation
    @chilampoon
    chilampoon committed Feb 12, 2024
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  2. resovle line char notes and some warnings

    @chilampoon
    chilampoon committed Feb 12, 2024
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  3. resolve doc warnings

    @chilampoon
    chilampoon committed Feb 12, 2024
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  4. merge try 1

    @chilampoon
    chilampoon committed Feb 12, 2024
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  5. Merge branch 'master' into chilampoon-improve-documentation

    @stemangiola
    stemangiola authored Feb 12, 2024
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  6. replace one_of in functions.R

    @chilampoon
    chilampoon committed Feb 12, 2024
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  7. resolve doc warnings and pull udpates

    @chilampoon
    chilampoon committed Feb 12, 2024
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Commits on Mar 29, 2024

  1. fix Bioc ERRORS

    @stemangiola
    stemangiola committed Mar 29, 2024
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Commits on Apr 5, 2024

  1. Improve error message

    @stemangiola
    stemangiola authored Apr 5, 2024
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  2. Update utilities.R

    @stemangiola
    stemangiola authored Apr 5, 2024
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Commits on Apr 8, 2024

  1. Merge branch 'master' of https://github.com/stemangiola/tidybulk

    @stemangiola
    stemangiola committed Apr 8, 2024
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Commits on Apr 29, 2024

  1. add argument

    @stemangiola
    stemangiola committed Apr 29, 2024
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  2. update docs and tests

    @stemangiola
    stemangiola committed Apr 29, 2024
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Commits on Apr 30, 2024

  1. bump x.y.z version to even y prior to creation of RELEASE_3_19 branch

    @jwokaty
    jwokaty committed Apr 30, 2024
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  2. bump x.y.z version to odd y following creation of RELEASE_3_19 branch

    @jwokaty
    jwokaty committed Apr 30, 2024
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Commits on May 10, 2024

  1. update documentation

    @stemangiola
    stemangiola committed May 10, 2024
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  2. return tibble with get action

    @stemangiola
    stemangiola committed May 10, 2024
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Commits on May 14, 2024

  1. version UP 

    Merge branch 'devel' of git.bioconductor.org:packages/tidybulk

# Conflicts:
#	DESCRIPTION
    @stemangiola
    stemangiola committed May 14, 2024
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  2. R dependency

    @stemangiola
    stemangiola committed May 14, 2024
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Commits on May 15, 2024

  1. Merge branch 'master' into DE-get-action-return-tibble

    @stemangiola
    stemangiola authored May 15, 2024
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  2. Merge pull request stemangiola#313 from stemangiola/quantile-normalis… 

    …e-custom-target

Quantile normalise custom target
    @stemangiola
    stemangiola authored May 15, 2024
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  3. Update DESCRIPTION

    @stemangiola
    stemangiola authored May 15, 2024
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  4. more improvements

    @stemangiola
    stemangiola committed May 15, 2024
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  5. drop knitr

    @stemangiola
    stemangiola committed May 15, 2024
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  6. Merge branch 'master' of github.com:stemangiola/tidybulk

    @stemangiola
    stemangiola committed May 15, 2024
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Commits on May 16, 2024

  1. fix README file read

    @stemangiola
    stemangiola committed May 16, 2024
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  2. fix README

    @stemangiola
    stemangiola committed May 16, 2024
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  3. return tibble with get action

    @stemangiola
    stemangiola committed May 16, 2024
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  4. Merge branch 'DE-get-action-return-tibble' of https://github.com/stem… 

    …angiola/tidybulk into DE-get-action-return-tibble
    @stemangiola
    stemangiola committed May 16, 2024
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  5. Merge pull request stemangiola#314 from stemangiola/DE-get-action-ret… 

    …urn-tibble

return tibble with get action
    @stemangiola
    stemangiola authored May 16, 2024
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  6. Merge branch 'master' into add-solve-confounders

    @stemangiola
    stemangiola authored May 16, 2024
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  7. Update DESCRIPTION

    @stemangiola
    stemangiola authored May 16, 2024
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Commits on Jul 7, 2024

  1. Merge pull request stemangiola#307 from stemangiola/add-solve-confoun… 

    …ders

add method
    @stemangiola
    stemangiola authored Jul 7, 2024
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Commits on Sep 3, 2024

  1. Merge branch 'chilampoon-improve-documentation'

    @william-hutchison
    william-hutchison committed Sep 3, 2024
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  2. Remove merge resolution comment

    @william-hutchison
    william-hutchison committed Sep 3, 2024
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