update docs and tests

stemangiola · Apr 29, 2024 · d64967f · d64967f
1 parent 86a7d5d
commit d64967f
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diff --git a/man/quantile_normalise_abundance-methods.Rd b/man/quantile_normalise_abundance-methods.Rd
diff --git a/tests/testthat/test-bulk_methods_SummarizedExperiment.R b/tests/testthat/test-bulk_methods_SummarizedExperiment.R
@@ -105,7 +105,21 @@ test_that("quantile normalisation",{
           filter(a=="SRR1740035" & b=="ABCB9") |>
           dplyr::pull(c_scaled)
       )
-
+
+    target_distribution = 
+      se_mini |> 
+      assay( "count") |> 
+      as.matrix() |> 
+      preprocessCore::normalize.quantiles.determine.target() 
+
+    se_mini |> 
+      quantile_normalise_abundance(
+        method = "preprocesscore_normalize_quantiles_use_target", 
+        target_distribution = target_distribution
+      ) |> 
+      expect_no_error()
+
+
 })
 
 test_that("tidybulk SummarizedExperiment normalisation subset",{