fix README file read

stemangiola · May 16, 2024 · cffe0e6 · cffe0e6
1 parent 1674609
commit cffe0e6
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/.gitignore b/.gitignore
@@ -22,3 +22,4 @@ _targets.R
 _targets*
 .DS_Store
 ._.DS_Store
+counts_SE.rda
diff --git a/README.Rmd b/README.Rmd
@@ -81,8 +81,6 @@ All functions are directly compatibble with `SummarizedExperiment` object.
 
 
 ```{r, echo=FALSE, include=FALSE, }
-
-
 library(dplyr)
 library(tidyr)
 library(tibble)
@@ -108,9 +106,9 @@ my_theme =
 		axis.title.y  = element_text(margin = margin(t = 10, r = 10, b = 10, l = 10))
 	)
 
-
-counts_SE = here("dev/counts_SE.rda") |> load()
-tibble_counts = counts_SE %>% tidybulk() %>% as_tibble()
+utils::download.file("https://zenodo.org/records/11201167/files/counts_SE.rda?download=1", destfile = "counts_SE.rda") 
+counts_SE = here("counts_SE.rda") |> load()
+tibble_counts = counts_SE %>% as_tibble()
 
 ```