specify method

stemangiola · Feb 7, 2024 · 40d3c76 · 40d3c76
1 parent 4d7cd8a
commit 40d3c76
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/tests/testthat/test-bulk_methods_SummarizedExperiment.R b/tests/testthat/test-bulk_methods_SummarizedExperiment.R
@@ -440,7 +440,11 @@ test_that("DE interaction effects", {
 
   breast_tcga_mini_SE |> 
     identify_abundant(factor_of_interest = Call) |>
-    test_differential_abundance(   ~ Call * interaction_term, contrasts = "CallHer2___interaction_term" ) |> 
+    test_differential_abundance( 
+      ~ Call * interaction_term, 
+      contrasts = "CallHer2___interaction_term",
+      method="edgeR_quasi_likelihood" 
+    ) |> 
     expect_no_error()
 
 })